182 related articles for article (PubMed ID: 33500403)
1. Community-curated and standardised metadata of published ancient metagenomic samples with AncientMetagenomeDir.
Fellows Yates JA; Andrades Valtueña A; Vågene ÅJ; Cribdon B; Velsko IM; Borry M; Bravo-Lopez MJ; Fernandez-Guerra A; Green EJ; Ramachandran SL; Heintzman PD; Spyrou MA; Hübner A; Gancz AS; Hider J; Allshouse AF; Zaro V; Warinner C
Sci Data; 2021 Jan; 8(1):31. PubMed ID: 33500403
[TBL] [Abstract][Full Text] [Related]
2. HumanMetagenomeDB: a public repository of curated and standardized metadata for human metagenomes.
Kasmanas JC; Bartholomäus A; Corrêa FB; Tal T; Jehmlich N; Herberth G; von Bergen M; Stadler PF; Carvalho ACPLF; Nunes da Rocha U
Nucleic Acids Res; 2021 Jan; 49(D1):D743-D750. PubMed ID: 33221926
[TBL] [Abstract][Full Text] [Related]
3. MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes.
Nata'ala MK; Avila Santos AP; Coelho Kasmanas J; Bartholomäus A; Saraiva JP; Godinho Silva S; Keller-Costa T; Costa R; Gomes NCM; Ponce de Leon Ferreira de Carvalho AC; Stadler PF; Sipoli Sanches D; Nunes da Rocha U
Environ Microbiome; 2022 Nov; 17(1):57. PubMed ID: 36401317
[TBL] [Abstract][Full Text] [Related]
4. The African Human Microbiome Portal: a public web portal of curated metagenomic metadata.
Kiran A; Hanachi M; Alsayed N; Fassatoui M; Oduaran OH; Allali I; Maslamoney S; Meintjes A; Zass L; Rocha JD; Kefi R; Benkahla A; Ghedira K; Panji S; Mulder N; Fadlelmola FM; Souiai O
Database (Oxford); 2024 Jan; 2024():. PubMed ID: 38204360
[TBL] [Abstract][Full Text] [Related]
5. AgroSeek: a system for computational analysis of environmental metagenomic data and associated metadata.
Liang X; Akers K; Keenum I; Wind L; Gupta S; Chen C; Aldaihani R; Pruden A; Zhang L; Knowlton KF; Xia K; Heath LS
BMC Bioinformatics; 2021 Mar; 22(1):117. PubMed ID: 33691615
[TBL] [Abstract][Full Text] [Related]
6. TerrestrialMetagenomeDB: a public repository of curated and standardized metadata for terrestrial metagenomes.
Corrêa FB; Saraiva JP; Stadler PF; da Rocha UN
Nucleic Acids Res; 2020 Jan; 48(D1):D626-D632. PubMed ID: 31728526
[TBL] [Abstract][Full Text] [Related]
7. A database of animal metagenomes.
Hu R; Yao R; Li L; Xu Y; Lei B; Tang G; Liang H; Lei Y; Li C; Li X; Liu K; Wang L; Zhang Y; Wang Y; Cui Y; Dai J; Ni W; Zhou P; Yu B; Hu S
Sci Data; 2022 Jun; 9(1):312. PubMed ID: 35710683
[TBL] [Abstract][Full Text] [Related]
8. grabseqs: simple downloading of reads and metadata from multiple next-generation sequencing data repositories.
Taylor LJ; Abbas A; Bushman FD
Bioinformatics; 2020 Jun; 36(11):3607-3609. PubMed ID: 32154830
[TBL] [Abstract][Full Text] [Related]
9. The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata.
Pagani I; Liolios K; Jansson J; Chen IM; Smirnova T; Nosrat B; Markowitz VM; Kyrpides NC
Nucleic Acids Res; 2012 Jan; 40(Database issue):D571-9. PubMed ID: 22135293
[TBL] [Abstract][Full Text] [Related]
10. The metagenomic data life-cycle: standards and best practices.
Ten Hoopen P; Finn RD; Bongo LA; Corre E; Fosso B; Meyer F; Mitchell A; Pelletier E; Pesole G; Santamaria M; Willassen NP; Cochrane G
Gigascience; 2017 Aug; 6(8):1-11. PubMed ID: 28637310
[TBL] [Abstract][Full Text] [Related]
11. "METAGENOTE: a simplified web platform for metadata annotation of genomic samples and streamlined submission to NCBI's sequence read archive".
Quiñones M; Liou DT; Shyu C; Kim W; Vujkovic-Cvijin I; Belkaid Y; Hurt DE
BMC Bioinformatics; 2020 Sep; 21(1):378. PubMed ID: 32883210
[TBL] [Abstract][Full Text] [Related]
12. The Genomic Observatories Metadatabase (GeOMe): A new repository for field and sampling event metadata associated with genetic samples.
Deck J; Gaither MR; Ewing R; Bird CE; Davies N; Meyer C; Riginos C; Toonen RJ; Crandall ED
PLoS Biol; 2017 Aug; 15(8):e2002925. PubMed ID: 28771471
[TBL] [Abstract][Full Text] [Related]
13. Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource.
Sun S; Chen J; Li W; Altintas I; Lin A; Peltier S; Stocks K; Allen EE; Ellisman M; Grethe J; Wooley J
Nucleic Acids Res; 2011 Jan; 39(Database issue):D546-51. PubMed ID: 21045053
[TBL] [Abstract][Full Text] [Related]
14. A comprehensive overview of microbiome data in the light of machine learning applications: categorization, accessibility, and future directions.
Kumar B; Lorusso E; Fosso B; Pesole G
Front Microbiol; 2024; 15():1343572. PubMed ID: 38419630
[TBL] [Abstract][Full Text] [Related]
15. NeuroTransDB: highly curated and structured transcriptomic metadata for neurodegenerative diseases.
Bagewadi S; Adhikari S; Dhrangadhariya A; Irin AK; Ebeling C; Namasivayam AA; Page M; Hofmann-Apitius M; Senger P
Database (Oxford); 2015; 2015():. PubMed ID: 26475471
[TBL] [Abstract][Full Text] [Related]
16. [Meta-Mesh: metagenomic data analysis system].
Su X; Song B; Wang X; Ma X; Xu J; Ning K
Sheng Wu Gong Cheng Xue Bao; 2014 Jan; 30(1):6-17. PubMed ID: 24818475
[TBL] [Abstract][Full Text] [Related]
17. DOE JGI Metagenome Workflow.
Clum A; Huntemann M; Bushnell B; Foster B; Foster B; Roux S; Hajek PP; Varghese N; Mukherjee S; Reddy TBK; Daum C; Yoshinaga Y; O'Malley R; Seshadri R; Kyrpides NC; Eloe-Fadrosh EA; Chen IA; Copeland A; Ivanova NN
mSystems; 2021 May; 6(3):. PubMed ID: 34006627
[TBL] [Abstract][Full Text] [Related]
18. The AnimalAssociatedMetagenomeDB reveals a bias towards livestock and developed countries and blind spots in functional-potential studies of animal-associated microbiomes.
Avila Santos AP; Kabiru Nata'ala M; Kasmanas JC; Bartholomäus A; Keller-Costa T; Jurburg SD; Tal T; Camarinha-Silva A; Saraiva JP; Ponce de Leon Ferreira de Carvalho AC; Stadler PF; Sipoli Sanches D; Rocha U
Anim Microbiome; 2023 Oct; 5(1):48. PubMed ID: 37798675
[TBL] [Abstract][Full Text] [Related]
19. Metagenomic assembly through the lens of validation: recent advances in assessing and improving the quality of genomes assembled from metagenomes.
Olson ND; Treangen TJ; Hill CM; Cepeda-Espinoza V; Ghurye J; Koren S; Pop M
Brief Bioinform; 2019 Jul; 20(4):1140-1150. PubMed ID: 28968737
[TBL] [Abstract][Full Text] [Related]
20. Meta-Storms: efficient search for similar microbial communities based on a novel indexing scheme and similarity score for metagenomic data.
Su X; Xu J; Ning K
Bioinformatics; 2012 Oct; 28(19):2493-501. PubMed ID: 22843983
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
