These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

119 related articles for article (PubMed ID: 33515000)

  • 1. MITGARD: an automated pipeline for mitochondrial genome assembly in eukaryotic species using RNA-seq data.
    Nachtigall PG; Grazziotin FG; Junqueira-de-Azevedo ILM
    Brief Bioinform; 2021 Sep; 22(5):. PubMed ID: 33515000
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Statistical Mitogenome Assembly with RepeaTs.
    Alqahtani F; Măndoiu II
    J Comput Biol; 2020 Sep; 27(9):1407-1421. PubMed ID: 32048871
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Complete mitochondrial genomes from transcriptomes: assessing pros and cons of data mining for assembling new mitogenomes.
    Forni G; Puccio G; Bourguignon T; Evans T; Mantovani B; Rota-Stabelli O; Luchetti A
    Sci Rep; 2019 Oct; 9(1):14806. PubMed ID: 31616005
    [TBL] [Abstract][Full Text] [Related]  

  • 4. MEANGS: an efficient seed-free tool for de novo assembling animal mitochondrial genome using whole genome NGS data.
    Song MH; Yan C; Li JT
    Brief Bioinform; 2022 Jan; 23(1):. PubMed ID: 34941991
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Recovering complete mitochondrial genome sequences from RNA-Seq: A case study of Polytomella non-photosynthetic green algae.
    Tian Y; Smith DR
    Mol Phylogenet Evol; 2016 May; 98():57-62. PubMed ID: 26860338
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Fully automated pipeline for detection of sex linked genes using RNA-Seq data.
    Michalovova M; Kubat Z; Hobza R; Vyskot B; Kejnovsky E
    BMC Bioinformatics; 2015 Mar; 16(1):78. PubMed ID: 25884927
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Siberian larch (Larix sibirica Ledeb.) mitochondrial genome assembled using both short and long nucleotide sequence reads is currently the largest known mitogenome.
    Putintseva YA; Bondar EI; Simonov EP; Sharov VV; Oreshkova NV; Kuzmin DA; Konstantinov YM; Shmakov VN; Belkov VI; Sadovsky MG; Keech O; Krutovsky KV
    BMC Genomics; 2020 Sep; 21(1):654. PubMed ID: 32972367
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Trimitomics: An efficient pipeline for mitochondrial assembly from transcriptomic reads in nonmodel species.
    Plese B; Rossi ME; Kenny NJ; Taboada S; Koutsouveli V; Riesgo A
    Mol Ecol Resour; 2019 Sep; 19(5):1230-1239. PubMed ID: 31070854
    [TBL] [Abstract][Full Text] [Related]  

  • 9. FINDER: an automated software package to annotate eukaryotic genes from RNA-Seq data and associated protein sequences.
    Banerjee S; Bhandary P; Woodhouse M; Sen TZ; Wise RP; Andorf CM
    BMC Bioinformatics; 2021 Apr; 22(1):205. PubMed ID: 33879057
    [TBL] [Abstract][Full Text] [Related]  

  • 10. SPARTA: Simple Program for Automated reference-based bacterial RNA-seq Transcriptome Analysis.
    Johnson BK; Scholz MB; Teal TK; Abramovitch RB
    BMC Bioinformatics; 2016 Feb; 17():66. PubMed ID: 26847232
    [TBL] [Abstract][Full Text] [Related]  

  • 11. The use of transcriptomic next-generation sequencing data to assemble mitochondrial genomes of Ancistrus spp. (Loricariidae).
    Moreira DA; Furtado C; Parente TE
    Gene; 2015 Nov; 573(1):171-5. PubMed ID: 26344710
    [TBL] [Abstract][Full Text] [Related]  

  • 12. AQME: A forensic mitochondrial DNA analysis tool for next-generation sequencing data.
    Sturk-Andreaggi K; Peck MA; Boysen C; Dekker P; McMahon TP; Marshall CK
    Forensic Sci Int Genet; 2017 Nov; 31():189-197. PubMed ID: 29080494
    [TBL] [Abstract][Full Text] [Related]  

  • 13. MitoPhAST, a new automated mitogenomic phylogeny tool in the post-genomic era with a case study of 89 decapod mitogenomes including eight new freshwater crayfish mitogenomes.
    Tan MH; Gan HM; Schultz MB; Austin CM
    Mol Phylogenet Evol; 2015 Apr; 85():180-8. PubMed ID: 25721538
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Next-Generation Sequencing of the Complete Mitochondrial Genome of the Endangered Species Black Lion Tamarin
    de Freitas PD; Mendez FL; Chávez-Congrains K; Galetti PM; Coutinho LL; Pissinatti A; Bustamante CD
    G3 (Bethesda); 2018 May; 8(6):1985-1991. PubMed ID: 29650540
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Rnnotator: an automated de novo transcriptome assembly pipeline from stranded RNA-Seq reads.
    Martin J; Bruno VM; Fang Z; Meng X; Blow M; Zhang T; Sherlock G; Snyder M; Wang Z
    BMC Genomics; 2010 Nov; 11():663. PubMed ID: 21106091
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Mitochondrial genome of Protobothrops dabieshanensis (Squamata: Viperidae: Crotalinae).
    Huang X; Zhang L; Pan T; Zhang B
    Mitochondrial DNA; 2014 Oct; 25(5):337-8. PubMed ID: 23841609
    [TBL] [Abstract][Full Text] [Related]  

  • 17. SLIDR and SLOPPR: flexible identification of spliced leader trans-splicing and prediction of eukaryotic operons from RNA-Seq data.
    Wenzel MA; Müller B; Pettitt J
    BMC Bioinformatics; 2021 Mar; 22(1):140. PubMed ID: 33752599
    [TBL] [Abstract][Full Text] [Related]  

  • 18. CoCo: RNA-seq read assignment correction for nested genes and multimapped reads.
    Deschamps-Francoeur G; Boivin V; Abou Elela S; Scott MS
    Bioinformatics; 2019 Dec; 35(23):5039-5047. PubMed ID: 31141144
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Two reads to rule them all: Nanopore long read-guided assembly of the iconic Christmas Island red crab, Gecarcoidea natalis (Pocock, 1888), mitochondrial genome and the challenges of AT-rich mitogenomes.
    Gan HM; Linton SM; Austin CM
    Mar Genomics; 2019 Jun; 45():64-71. PubMed ID: 30928201
    [TBL] [Abstract][Full Text] [Related]  

  • 20. [Mitogenome assembly strategies and software applications in the genome era].
    Kuang WM; Yu L
    Yi Chuan; 2019 Nov; 41(11):979-993. PubMed ID: 31735702
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.