BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

353 related articles for article (PubMed ID: 33537181)

  • 1. Methods for Proteogenomics Data Analysis, Challenges, and Scalability Bottlenecks: A Survey.
    Tariq MU; Haseeb M; Aledhari M; Razzak R; Parizi RM; Saeed F
    IEEE Access; 2021; 9():5497-5516. PubMed ID: 33537181
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Methods, Tools and Current Perspectives in Proteogenomics.
    Ruggles KV; Krug K; Wang X; Clauser KR; Wang J; Payne SH; Fenyö D; Zhang B; Mani DR
    Mol Cell Proteomics; 2017 Jun; 16(6):959-981. PubMed ID: 28456751
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Proteogenomics: From next-generation sequencing (NGS) and mass spectrometry-based proteomics to precision medicine.
    Ang MY; Low TY; Lee PY; Wan Mohamad Nazarie WF; Guryev V; Jamal R
    Clin Chim Acta; 2019 Nov; 498():38-46. PubMed ID: 31421119
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Identification of new protein coding sequences and signal peptidase cleavage sites of Helicobacter pylori strain 26695 by proteogenomics.
    Müller SA; Findeiß S; Pernitzsch SR; Wissenbach DK; Stadler PF; Hofacker IL; von Bergen M; Kalkhof S
    J Proteomics; 2013 Jun; 86():27-42. PubMed ID: 23665149
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Improving Gene Annotation of the Peanut Genome by Integrated Proteogenomics Workflow.
    Li H; Zhou R; Xu S; Chen X; Hong Y; Lu Q; Liu H; Zhou B; Liang X
    J Proteome Res; 2020 Jun; 19(6):2226-2235. PubMed ID: 32367721
    [TBL] [Abstract][Full Text] [Related]  

  • 6. ProGeo-neo: a customized proteogenomic workflow for neoantigen prediction and selection.
    Li Y; Wang G; Tan X; Ouyang J; Zhang M; Song X; Liu Q; Leng Q; Chen L; Xie L
    BMC Med Genomics; 2020 Apr; 13(Suppl 5):52. PubMed ID: 32241270
    [TBL] [Abstract][Full Text] [Related]  

  • 7. False discovery rate: the Achilles' heel of proteogenomics.
    Aggarwal S; Raj A; Kumar D; Dash D; Yadav AK
    Brief Bioinform; 2022 Sep; 23(5):. PubMed ID: 35534181
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Proteogenomics in microbiology: taking the right turn at the junction of genomics and proteomics.
    Kucharova V; Wiker HG
    Proteomics; 2014 Dec; 14(23-24):2360-675. PubMed ID: 25263021
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Peptidomics and proteogenomics: background, challenges and future needs.
    Vitorino R; Choudhury M; Guedes S; Ferreira R; Thongboonkerd V; Sharma L; Amado F; Srivastava S
    Expert Rev Proteomics; 2021 Aug; 18(8):643-659. PubMed ID: 34517741
    [TBL] [Abstract][Full Text] [Related]  

  • 10. OryzaPG-DB: rice proteome database based on shotgun proteogenomics.
    Helmy M; Tomita M; Ishihama Y
    BMC Plant Biol; 2011 Apr; 11():63. PubMed ID: 21486466
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Development of a Spectral Library for the Discovery of Altered Genomic Events in Mycobacterium avium Associated With Virulence Using Mass Spectrometry-Based Proteogenomic Analysis.
    Kotimoole CN; Antil N; Kasaragod S; Behera SK; Aravind A; Reiling N; Flo TH; Prasad TSK
    Mol Cell Proteomics; 2023 May; 22(5):100533. PubMed ID: 36948415
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Flexible and accessible workflows for improved proteogenomic analysis using the Galaxy framework.
    Jagtap PD; Johnson JE; Onsongo G; Sadler FW; Murray K; Wang Y; Shenykman GM; Bandhakavi S; Smith LM; Griffin TJ
    J Proteome Res; 2014 Dec; 13(12):5898-908. PubMed ID: 25301683
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Mass spectrometry at the interface of proteomics and genomics.
    Krug K; Nahnsen S; Macek B
    Mol Biosyst; 2011 Feb; 7(2):284-91. PubMed ID: 20967315
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Proteoform Identification by Combining RNA-Seq and Top-Down Mass Spectrometry.
    Chen W; Liu X
    J Proteome Res; 2021 Jan; 20(1):261-269. PubMed ID: 33183009
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Deep coverage of the Escherichia coli proteome enables the assessment of false discovery rates in simple proteogenomic experiments.
    Krug K; Carpy A; Behrends G; Matic K; Soares NC; Macek B
    Mol Cell Proteomics; 2013 Nov; 12(11):3420-30. PubMed ID: 23908556
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Pool-seq driven proteogenomic database for Group G Streptococcus.
    Weldatsadik RG; Datta N; Kolmeder C; Vuopio J; Kere J; Wilkman SV; Flatt JW; Vuento R; Haapasalo KJ; Keskitalo S; Varjosalo M; Jokiranta TS
    J Proteomics; 2019 Jun; 201():84-92. PubMed ID: 31015036
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Proteogenomics: concepts, applications and computational strategies.
    Nesvizhskii AI
    Nat Methods; 2014 Nov; 11(11):1114-25. PubMed ID: 25357241
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Proteogenomic interrogation of cancer cell lines: an overview of the field.
    Tsang O; Wong JWH
    Expert Rev Proteomics; 2021 Mar; 18(3):221-232. PubMed ID: 33877947
    [No Abstract]   [Full Text] [Related]  

  • 19. Comparative proteogenomics: combining mass spectrometry and comparative genomics to analyze multiple genomes.
    Gupta N; Benhamida J; Bhargava V; Goodman D; Kain E; Kerman I; Nguyen N; Ollikainen N; Rodriguez J; Wang J; Lipton MS; Romine M; Bafna V; Smith RD; Pevzner PA
    Genome Res; 2008 Jul; 18(7):1133-42. PubMed ID: 18426904
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Proteogenomic Methods to Improve Genome Annotation.
    Datta KK; Madugundu AK; Gowda H
    Methods Mol Biol; 2016; 1410():77-89. PubMed ID: 26867739
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 18.