These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

140 related articles for article (PubMed ID: 33538792)

  • 1. RNAxplorer: harnessing the power of guiding potentials to sample RNA landscapes.
    Entzian G; Hofacker IL; Ponty Y; Lorenz R; Tanzer A
    Bioinformatics; 2021 Aug; 37(15):2126-2133. PubMed ID: 33538792
    [TBL] [Abstract][Full Text] [Related]  

  • 2. pourRNA-a time- and memory-efficient approach for the guided exploration of RNA energy landscapes.
    Entzian G; Raden M
    Bioinformatics; 2020 Jan; 36(2):462-469. PubMed ID: 31350881
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Efficient approximations of RNA kinetics landscape using non-redundant sampling.
    Michálik J; Touzet H; Ponty Y
    Bioinformatics; 2017 Jul; 33(14):i283-i292. PubMed ID: 28882001
    [TBL] [Abstract][Full Text] [Related]  

  • 4. DrTransformer: heuristic cotranscriptional RNA folding using the nearest neighbor energy model.
    Badelt S; Lorenz R; Hofacker IL
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36655786
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Enhanced sampling method with coarse graining of conformational space.
    Zhu W; Zhang J; Wang J; Li W; Wang W
    Phys Rev E; 2021 Mar; 103(3-1):032404. PubMed ID: 33862709
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Finding the direct optimal RNA barrier energy and improving pathways with an arbitrary energy model.
    Takizawa H; Iwakiri J; Terai G; Asai K
    Bioinformatics; 2020 Jul; 36(Suppl_1):i227-i235. PubMed ID: 32657400
    [TBL] [Abstract][Full Text] [Related]  

  • 7. RNAblueprint: flexible multiple target nucleic acid sequence design.
    Hammer S; Tschiatschek B; Flamm C; Hofacker IL; Findeiß S
    Bioinformatics; 2017 Sep; 33(18):2850-2858. PubMed ID: 28449031
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Atlasing of Assembly Landscapes using Distance Geometry and Graph Rigidity.
    Prabhu R; Sitharam M; Ozkan A; Wu R
    J Chem Inf Model; 2020 Oct; 60(10):4924-4957. PubMed ID: 32786706
    [TBL] [Abstract][Full Text] [Related]  

  • 9. RNApuzzler: efficient outerplanar drawing of RNA-secondary structures.
    Wiegreffe D; Alexander D; Stadler PF; Zeckzer D
    Bioinformatics; 2019 Apr; 35(8):1342-1349. PubMed ID: 30239566
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Basin Hopping Graph: a computational framework to characterize RNA folding landscapes.
    Kucharík M; Hofacker IL; Stadler PF; Qin J
    Bioinformatics; 2014 Jul; 30(14):2009-17. PubMed ID: 24648041
    [TBL] [Abstract][Full Text] [Related]  

  • 11. MMpred: a distance-assisted multimodal conformation sampling for de novo protein structure prediction.
    Zhao KL; Liu J; Zhou XG; Su JZ; Zhang Y; Zhang GJ
    Bioinformatics; 2021 Dec; 37(23):4350-4356. PubMed ID: 34185079
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Knotty: efficient and accurate prediction of complex RNA pseudoknot structures.
    Jabbari H; Wark I; Montemagno C; Will S
    Bioinformatics; 2018 Nov; 34(22):3849-3856. PubMed ID: 29868872
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Finding stable local optimal RNA secondary structures.
    Li Y; Zhang S
    Bioinformatics; 2011 Nov; 27(21):2994-3001. PubMed ID: 21903624
    [TBL] [Abstract][Full Text] [Related]  

  • 14. An unbiased adaptive sampling algorithm for the exploration of RNA mutational landscapes under evolutionary pressure.
    Waldispühl J; Ponty Y
    J Comput Biol; 2011 Nov; 18(11):1465-79. PubMed ID: 22035326
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Particle Gibbs sampling for Bayesian phylogenetic inference.
    Wang S; Wang L
    Bioinformatics; 2021 May; 37(5):642-649. PubMed ID: 33045053
    [TBL] [Abstract][Full Text] [Related]  

  • 16. The locality dilemma of Sankoff-like RNA alignments.
    Müller T; Miladi M; Hutter F; Hofacker I; Will S; Backofen R
    Bioinformatics; 2020 Jul; 36(Suppl_1):i242-i250. PubMed ID: 32657398
    [TBL] [Abstract][Full Text] [Related]  

  • 17. ALeS: adaptive-length spaced-seed design.
    Mallik A; Ilie L
    Bioinformatics; 2021 Jun; 37(9):1206-1210. PubMed ID: 34107042
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Energy landscapes, folding mechanisms, and kinetics of RNA tetraloop hairpins.
    Chakraborty D; Collepardo-Guevara R; Wales DJ
    J Am Chem Soc; 2014 Dec; 136(52):18052-61. PubMed ID: 25453221
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A sequential niche multimodal conformational sampling algorithm for protein structure prediction.
    Xia YH; Peng CX; Zhou XG; Zhang GJ
    Bioinformatics; 2021 Dec; 37(23):4357-4365. PubMed ID: 34245242
    [TBL] [Abstract][Full Text] [Related]  

  • 20. SHAPE directed RNA folding.
    Lorenz R; Luntzer D; Hofacker IL; Stadler PF; Wolfinger MT
    Bioinformatics; 2016 Jan; 32(1):145-7. PubMed ID: 26353838
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.