BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

424 related articles for article (PubMed ID: 33545556)

  • 1. Potential APOBEC-mediated RNA editing of the genomes of SARS-CoV-2 and other coronaviruses and its impact on their longer term evolution.
    Ratcliff J; Simmonds P
    Virology; 2021 Apr; 556():62-72. PubMed ID: 33545556
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Rampant C→U Hypermutation in the Genomes of SARS-CoV-2 and Other Coronaviruses: Causes and Consequences for Their Short- and Long-Term Evolutionary Trajectories.
    Simmonds P
    mSphere; 2020 Jun; 5(3):. PubMed ID: 32581081
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Extensive C->U transition biases in the genomes of a wide range of mammalian RNA viruses; potential associations with transcriptional mutations, damage- or host-mediated editing of viral RNA.
    Simmonds P; Ansari MA
    PLoS Pathog; 2021 Jun; 17(6):e1009596. PubMed ID: 34061905
    [TBL] [Abstract][Full Text] [Related]  

  • 4. The substitution spectra of coronavirus genomes.
    Forni D; Cagliani R; Pontremoli C; Clerici M; Sironi M
    Brief Bioinform; 2022 Jan; 23(1):. PubMed ID: 34518866
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Coronavirus genomes carry the signatures of their habitats.
    Wei Y; Silke JR; Aris P; Xia X
    PLoS One; 2020; 15(12):e0244025. PubMed ID: 33351847
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Evidence for host-dependent RNA editing in the transcriptome of SARS-CoV-2.
    Di Giorgio S; Martignano F; Torcia MG; Mattiuz G; Conticello SG
    Sci Adv; 2020 Jun; 6(25):eabb5813. PubMed ID: 32596474
    [TBL] [Abstract][Full Text] [Related]  

  • 7. The roles of APOBEC-mediated RNA editing in SARS-CoV-2 mutations, replication and fitness.
    Kim K; Calabrese P; Wang S; Qin C; Rao Y; Feng P; Chen XS
    Sci Rep; 2022 Sep; 12(1):14972. PubMed ID: 36100631
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Point mutation bias in SARS-CoV-2 variants results in increased ability to stimulate inflammatory responses.
    Kosuge M; Furusawa-Nishii E; Ito K; Saito Y; Ogasawara K
    Sci Rep; 2020 Oct; 10(1):17766. PubMed ID: 33082451
    [TBL] [Abstract][Full Text] [Related]  

  • 9. The role of A-to-I RNA editing in infections by RNA viruses: Possible implications for SARS-CoV-2 infection.
    Vlachogiannis NI; Verrou KM; Stellos K; Sfikakis PP; Paraskevis D
    Clin Immunol; 2021 May; 226():108699. PubMed ID: 33639276
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Host-directed editing of the SARS-CoV-2 genome.
    Mourier T; Sadykov M; Carr MJ; Gonzalez G; Hall WW; Pain A
    Biochem Biophys Res Commun; 2021 Jan; 538():35-39. PubMed ID: 33234239
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Similarity between mutation spectra in hypermutated genomes of rubella virus and in SARS-CoV-2 genomes accumulated during the COVID-19 pandemic.
    Klimczak LJ; Randall TA; Saini N; Li JL; Gordenin DA
    PLoS One; 2020; 15(10):e0237689. PubMed ID: 33006981
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Pervasive RNA Secondary Structure in the Genomes of SARS-CoV-2 and Other Coronaviruses.
    Simmonds P
    mBio; 2020 Oct; 11(6):. PubMed ID: 33127861
    [TBL] [Abstract][Full Text] [Related]  

  • 13. RNA binding to APOBEC deaminases; Not simply a substrate for C to U editing.
    Smith HC
    RNA Biol; 2017 Sep; 14(9):1153-1165. PubMed ID: 27869537
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Evaluation on the use of Nanopore sequencing for direct characterization of coronaviruses from respiratory specimens, and a study on emerging missense mutations in partial RdRP gene of SARS-CoV-2.
    Chan WS; Au CH; Lam HY; Wang CLN; Ho DN; Lam YM; Chu DKW; Poon LLM; Chan TL; Zee JS; Ma ESK; Tang BSF
    Virol J; 2020 Nov; 17(1):183. PubMed ID: 33225958
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Mutational Asymmetries in the SARS-CoV-2 Genome May Lead to Increased Hydrophobicity of Virus Proteins.
    Matyášek R; Řehůřková K; Berta Marošiová K; Kovařík A
    Genes (Basel); 2021 May; 12(6):. PubMed ID: 34072181
    [TBL] [Abstract][Full Text] [Related]  

  • 16. The preferred nucleotide contexts of the AID/APOBEC cytidine deaminases have differential effects when mutating retrotransposon and virus sequences compared to host genes.
    Chen J; MacCarthy T
    PLoS Comput Biol; 2017 Mar; 13(3):e1005471. PubMed ID: 28362825
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Host Immune Response Driving SARS-CoV-2 Evolution.
    Wang R; Hozumi Y; Zheng YH; Yin C; Wei GW
    Viruses; 2020 Sep; 12(10):. PubMed ID: 32992592
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Analysis of SARS-CoV-2 haplotypes and genomic sequences during 2020 in Victoria, Australia, in the context of putative deficits in innate immune deaminase anti-viral responses.
    Lindley RA; Steele EJ
    Scand J Immunol; 2021 Nov; 94(5):e13100. PubMed ID: 34940992
    [TBL] [Abstract][Full Text] [Related]  

  • 19. The APOBEC Protein Family: United by Structure, Divergent in Function.
    Salter JD; Bennett RP; Smith HC
    Trends Biochem Sci; 2016 Jul; 41(7):578-594. PubMed ID: 27283515
    [TBL] [Abstract][Full Text] [Related]  

  • 20. From RNA World to SARS-CoV-2: The Edited Story of RNA Viral Evolution.
    Kockler ZW; Gordenin DA
    Cells; 2021 Jun; 10(6):. PubMed ID: 34202997
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 22.