These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

235 related articles for article (PubMed ID: 33554119)

  • 1. Interpretable detection of novel human viruses from genome sequencing data.
    Bartoszewicz JM; Seidel A; Renard BY
    NAR Genom Bioinform; 2021 Mar; 3(1):lqab004. PubMed ID: 33554119
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Deep learning-based real-time detection of novel pathogens during sequencing.
    Bartoszewicz JM; Genske U; Renard BY
    Brief Bioinform; 2021 Nov; 22(6):. PubMed ID: 34297793
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A multi-task CNN learning model for taxonomic assignment of human viruses.
    Ma H; Tan TW; Ban KHK
    BMC Bioinformatics; 2021 Jun; 22(Suppl 6):194. PubMed ID: 34078269
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A Universal Next-Generation Sequencing Protocol To Generate Noninfectious Barcoded cDNA Libraries from High-Containment RNA Viruses.
    Moser LA; Ramirez-Carvajal L; Puri V; Pauszek SJ; Matthews K; Dilley KA; Mullan C; McGraw J; Khayat M; Beeri K; Yee A; Dugan V; Heise MT; Frieman MB; Rodriguez LL; Bernard KA; Wentworth DE; Stockwell TB; Shabman RS
    mSystems; 2016; 1(3):. PubMed ID: 27822536
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Machine learning random forest for predicting oncosomatic variant NGS analysis.
    Pellegrino E; Jacques C; Beaufils N; Nanni I; Carlioz A; Metellus P; Ouafik L
    Sci Rep; 2021 Nov; 11(1):21820. PubMed ID: 34750410
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Correcting the Estimation of Viral Taxa Distributions in Next-Generation Sequencing Data after Applying Artificial Neural Networks.
    Kohls M; Kircher M; Krepel J; Liebig P; Jung K
    Genes (Basel); 2021 Oct; 12(11):. PubMed ID: 34828361
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Coronavirus discovery by metagenomic sequencing: a tool for pandemic preparedness.
    Carbo EC; Sidorov IA; Zevenhoven-Dobbe JC; Snijder EJ; Claas EC; Laros JFJ; Kroes ACM; de Vries JJC
    J Clin Virol; 2020 Oct; 131():104594. PubMed ID: 32866812
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Targeted Virome Sequencing Enhances Unbiased Detection and Genome Assembly of Known and Emerging Viruses-The Example of SARS-CoV-2.
    Pogka V; Papadopoulou G; Valiakou V; Sgouras DN; Mentis AF; Karamitros T
    Viruses; 2022 Jun; 14(6):. PubMed ID: 35746743
    [TBL] [Abstract][Full Text] [Related]  

  • 9.
    MacDonald ML; Polson SW; Lee KH
    mSphere; 2021 Apr; 6(2):. PubMed ID: 33883263
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Virus detection in high-throughput sequencing data without a reference genome of the host.
    Kruppa J; Jo WK; van der Vries E; Ludlow M; Osterhaus A; Baumgaertner W; Jung K
    Infect Genet Evol; 2018 Dec; 66():180-187. PubMed ID: 30292006
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Detecting DNA of novel fungal pathogens using ResNets and a curated fungi-hosts data collection.
    Bartoszewicz JM; Nasri F; Nowicka M; Renard BY
    Bioinformatics; 2022 Sep; 38(Suppl_2):ii168-ii174. PubMed ID: 36124807
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Variation in the ACE2 receptor has limited utility for SARS-CoV-2 host prediction.
    Mollentze N; Keen D; Munkhbayar U; Biek R; Streicker DG
    Elife; 2022 Nov; 11():. PubMed ID: 36416537
    [TBL] [Abstract][Full Text] [Related]  

  • 13. DeePaC: predicting pathogenic potential of novel DNA with reverse-complement neural networks.
    Bartoszewicz JM; Seidel A; Rentzsch R; Renard BY
    Bioinformatics; 2020 Jan; 36(1):81-89. PubMed ID: 31298694
    [TBL] [Abstract][Full Text] [Related]  

  • 14. VGEA: an RNA viral assembly toolkit.
    Oluniyi PE; Ajogbasile F; Oguzie J; Uwanibe J; Kayode A; Happi A; Ugwu A; Olumade T; Ogunsanya O; Eromon PE; Folarin O; Frost SDW; Heeney J; Happi CT
    PeerJ; 2021; 9():e12129. PubMed ID: 34567846
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Rapid screening and identification of viral pathogens in metagenomic data.
    Song S; Ma L; Xu X; Shi H; Li X; Liu Y; Hao P
    BMC Med Genomics; 2021 Dec; 14(Suppl 6):289. PubMed ID: 34903237
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Validation of Variant Assembly Using HAPHPIPE with Next-Generation Sequence Data from Viruses.
    Gibson KM; Steiner MC; Rentia U; Bendall ML; Pérez-Losada M; Crandall KA
    Viruses; 2020 Jul; 12(7):. PubMed ID: 32674515
    [TBL] [Abstract][Full Text] [Related]  

  • 17. MAC-ErrorReads: machine learning-assisted classifier for filtering erroneous NGS reads.
    Sami A; El-Metwally S; Rashad MZ
    BMC Bioinformatics; 2024 Feb; 25(1):61. PubMed ID: 38321434
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Benchmarking and Assessment of Eight
    Gupta AK; Kumar M
    OMICS; 2022 Jul; 26(7):372-381. PubMed ID: 35759429
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Interpretable and Predictive Deep Neural Network Modeling of the SARS-CoV-2 Spike Protein Sequence to Predict COVID-19 Disease Severity.
    Sokhansanj BA; Zhao Z; Rosen GL
    Biology (Basel); 2022 Dec; 11(12):. PubMed ID: 36552295
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Genomic characterisation and epidemiology of 2019 novel coronavirus: implications for virus origins and receptor binding.
    Lu R; Zhao X; Li J; Niu P; Yang B; Wu H; Wang W; Song H; Huang B; Zhu N; Bi Y; Ma X; Zhan F; Wang L; Hu T; Zhou H; Hu Z; Zhou W; Zhao L; Chen J; Meng Y; Wang J; Lin Y; Yuan J; Xie Z; Ma J; Liu WJ; Wang D; Xu W; Holmes EC; Gao GF; Wu G; Chen W; Shi W; Tan W
    Lancet; 2020 Feb; 395(10224):565-574. PubMed ID: 32007145
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.