These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

636 related articles for article (PubMed ID: 33559604)

  • 1. The accuracy of protein models automatically built into cryo-EM maps with ARP/wARP.
    Chojnowski G; Sobolev E; Heuser P; Lamzin VS
    Acta Crystallogr D Struct Biol; 2021 Feb; 77(Pt 2):142-150. PubMed ID: 33559604
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Current approaches for automated model building into cryo-EM maps using Buccaneer with CCP-EM.
    Hoh SW; Burnley T; Cowtan K
    Acta Crystallogr D Struct Biol; 2020 Jun; 76(Pt 6):531-541. PubMed ID: 32496215
    [TBL] [Abstract][Full Text] [Related]  

  • 3. New tools for the analysis and validation of cryo-EM maps and atomic models.
    Afonine PV; Klaholz BP; Moriarty NW; Poon BK; Sobolev OV; Terwilliger TC; Adams PD; Urzhumtsev A
    Acta Crystallogr D Struct Biol; 2018 Sep; 74(Pt 9):814-840. PubMed ID: 30198894
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Smart de novo Macromolecular Structure Modeling from Cryo-EM Maps.
    Si D; Chen J; Nakamura A; Chang L; Guan H
    J Mol Biol; 2023 May; 435(9):167967. PubMed ID: 36681181
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Current approaches for the fitting and refinement of atomic models into cryo-EM maps using CCP-EM.
    Nicholls RA; Tykac M; Kovalevskiy O; Murshudov GN
    Acta Crystallogr D Struct Biol; 2018 Jun; 74(Pt 6):492-505. PubMed ID: 29872001
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Cryo-EM of macromolecular assemblies at near-atomic resolution.
    Baker ML; Zhang J; Ludtke SJ; Chiu W
    Nat Protoc; 2010 Sep; 5(10):1697-708. PubMed ID: 20885381
    [TBL] [Abstract][Full Text] [Related]  

  • 7. CERES: a cryo-EM re-refinement system for continuous improvement of deposited models.
    Liebschner D; Afonine PV; Moriarty NW; Poon BK; Chen VB; Adams PD
    Acta Crystallogr D Struct Biol; 2021 Jan; 77(Pt 1):48-61. PubMed ID: 33404525
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Building Protein Atomic Models from Cryo-EM Density Maps and Residue Co-Evolution.
    Bouvier G; Bardiaux B; Pellarin R; Rapisarda C; Nilges M
    Biomolecules; 2022 Sep; 12(9):. PubMed ID: 36139128
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Redeployment of automated MrBUMP search-model identification for map fitting in cryo-EM.
    Simpkin AJ; Winn MD; Rigden DJ; Keegan RM
    Acta Crystallogr D Struct Biol; 2021 Nov; 77(Pt 11):1378-1385. PubMed ID: 34726166
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Refinement of Atomic Structures Against cryo-EM Maps.
    Murshudov GN
    Methods Enzymol; 2016; 579():277-305. PubMed ID: 27572731
    [TBL] [Abstract][Full Text] [Related]  

  • 11. De novo main-chain modeling for EM maps using MAINMAST.
    Terashi G; Kihara D
    Nat Commun; 2018 Apr; 9(1):1618. PubMed ID: 29691408
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Cryo electron microscopy to determine the structure of macromolecular complexes.
    Carroni M; Saibil HR
    Methods; 2016 Feb; 95():78-85. PubMed ID: 26638773
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Using cryo-electron microscopy maps for X-ray structure determination of homologues.
    Zeng L; Ding W; Hao Q
    Acta Crystallogr D Struct Biol; 2020 Jan; 76(Pt 1):63-72. PubMed ID: 31909744
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Comparing Cryo-EM Reconstructions and Validating Atomic Model Fit Using Difference Maps.
    Joseph AP; Lagerstedt I; Jakobi A; Burnley T; Patwardhan A; Topf M; Winn M
    J Chem Inf Model; 2020 May; 60(5):2552-2560. PubMed ID: 32043355
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A fragment based method for modeling of protein segments into cryo-EM density maps.
    Ismer J; Rose AS; Tiemann JKS; Hildebrand PW
    BMC Bioinformatics; 2017 Nov; 18(1):475. PubMed ID: 29132296
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Accurate model annotation of a near-atomic resolution cryo-EM map.
    Hryc CF; Chen DH; Afonine PV; Jakana J; Wang Z; Haase-Pettingell C; Jiang W; Adams PD; King JA; Schmid MF; Chiu W
    Proc Natl Acad Sci U S A; 2017 Mar; 114(12):3103-3108. PubMed ID: 28270620
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Automated macromolecular model building for X-ray crystallography using ARP/wARP version 7.
    Langer G; Cohen SX; Lamzin VS; Perrakis A
    Nat Protoc; 2008; 3(7):1171-9. PubMed ID: 18600222
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Automated structure refinement of macromolecular assemblies from cryo-EM maps using Rosetta.
    Wang RY; Song Y; Barad BA; Cheng Y; Fraser JS; DiMaio F
    Elife; 2016 Sep; 5():. PubMed ID: 27669148
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Fast and automated protein-DNA/RNA macromolecular complex modeling from cryo-EM maps.
    Nakamura A; Meng H; Zhao M; Wang F; Hou J; Cao R; Si D
    Brief Bioinform; 2023 Mar; 24(2):. PubMed ID: 36682003
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge.
    Lawson CL; Kryshtafovych A; Adams PD; Afonine PV; Baker ML; Barad BA; Bond P; Burnley T; Cao R; Cheng J; Chojnowski G; Cowtan K; Dill KA; DiMaio F; Farrell DP; Fraser JS; Herzik MA; Hoh SW; Hou J; Hung LW; Igaev M; Joseph AP; Kihara D; Kumar D; Mittal S; Monastyrskyy B; Olek M; Palmer CM; Patwardhan A; Perez A; Pfab J; Pintilie GD; Richardson JS; Rosenthal PB; Sarkar D; Schäfer LU; Schmid MF; Schröder GF; Shekhar M; Si D; Singharoy A; Terashi G; Terwilliger TC; Vaiana A; Wang L; Wang Z; Wankowicz SA; Williams CJ; Winn M; Wu T; Yu X; Zhang K; Berman HM; Chiu W
    Nat Methods; 2021 Feb; 18(2):156-164. PubMed ID: 33542514
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 32.