These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

171 related articles for article (PubMed ID: 33573603)

  • 41. Improving the sensitivity of long read overlap detection using grouped short k-mer matches.
    Du N; Chen J; Sun Y
    BMC Genomics; 2019 Apr; 20(Suppl 2):190. PubMed ID: 30967123
    [TBL] [Abstract][Full Text] [Related]  

  • 42. A fast read alignment method based on seed-and-vote for next generation sequencing.
    Liu S; Wang Y; Wang F
    BMC Bioinformatics; 2016 Dec; 17(Suppl 17):466. PubMed ID: 28155631
    [TBL] [Abstract][Full Text] [Related]  

  • 43. mrsFAST-Ultra: a compact, SNP-aware mapper for high performance sequencing applications.
    Hach F; Sarrafi I; Hormozdiari F; Alkan C; Eichler EE; Sahinalp SC
    Nucleic Acids Res; 2014 Jul; 42(Web Server issue):W494-500. PubMed ID: 24810850
    [TBL] [Abstract][Full Text] [Related]  

  • 44. A hybrid short read mapping accelerator.
    Chen Y; Schmidt B; Maskell DL
    BMC Bioinformatics; 2013 Feb; 14():67. PubMed ID: 23441908
    [TBL] [Abstract][Full Text] [Related]  

  • 45. The GEM mapper: fast, accurate and versatile alignment by filtration.
    Marco-Sola S; Sammeth M; Guigó R; Ribeca P
    Nat Methods; 2012 Dec; 9(12):1185-8. PubMed ID: 23103880
    [TBL] [Abstract][Full Text] [Related]  

  • 46. Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences.
    Li H
    Bioinformatics; 2016 Jul; 32(14):2103-10. PubMed ID: 27153593
    [TBL] [Abstract][Full Text] [Related]  

  • 47. Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory.
    Chaisson MJ; Tesler G
    BMC Bioinformatics; 2012 Sep; 13():238. PubMed ID: 22988817
    [TBL] [Abstract][Full Text] [Related]  

  • 48. Efficient mapping of accurate long reads in minimizer space with mapquik.
    Ekim B; Sahlin K; Medvedev P; Berger B; Chikhi R
    Genome Res; 2023 Jul; 33(7):1188-1197. PubMed ID: 37399256
    [TBL] [Abstract][Full Text] [Related]  

  • 49. NPBSS: a new PacBio sequencing simulator for generating the continuous long reads with an empirical model.
    Wei ZG; Zhang SW
    BMC Bioinformatics; 2018 May; 19(1):177. PubMed ID: 29788930
    [TBL] [Abstract][Full Text] [Related]  

  • 50. LAMSA: fast split read alignment with long approximate matches.
    Liu B; Gao Y; Wang Y
    Bioinformatics; 2017 Jan; 33(2):192-201. PubMed ID: 27667793
    [TBL] [Abstract][Full Text] [Related]  

  • 51. CLAST: CUDA implemented large-scale alignment search tool.
    Yano M; Mori H; Akiyama Y; Yamada T; Kurokawa K
    BMC Bioinformatics; 2014 Dec; 15(1):406. PubMed ID: 25495907
    [TBL] [Abstract][Full Text] [Related]  

  • 52. An effective method to resolve ambiguous bisulfite-treated reads.
    Liu M; Xu Y
    BMC Bioinformatics; 2021 May; 22(1):283. PubMed ID: 34044763
    [TBL] [Abstract][Full Text] [Related]  

  • 53. Gencore: an efficient tool to generate consensus reads for error suppressing and duplicate removing of NGS data.
    Chen S; Zhou Y; Chen Y; Huang T; Liao W; Xu Y; Li Z; Gu J
    BMC Bioinformatics; 2019 Dec; 20(Suppl 23):606. PubMed ID: 31881822
    [TBL] [Abstract][Full Text] [Related]  

  • 54. SOAP3-dp: fast, accurate and sensitive GPU-based short read aligner.
    Luo R; Wong T; Zhu J; Liu CM; Zhu X; Wu E; Lee LK; Lin H; Zhu W; Cheung DW; Ting HF; Yiu SM; Peng S; Yu C; Li Y; Li R; Lam TW
    PLoS One; 2013; 8(5):e65632. PubMed ID: 23741504
    [TBL] [Abstract][Full Text] [Related]  

  • 55. Arioc: GPU-accelerated alignment of short bisulfite-treated reads.
    Wilton R; Li X; Feinberg AP; Szalay AS
    Bioinformatics; 2018 Aug; 34(15):2673-2675. PubMed ID: 29554207
    [TBL] [Abstract][Full Text] [Related]  

  • 56. Calling known variants and identifying new variants while rapidly aligning sequence data.
    VanRaden PM; Bickhart DM; O'Connell JR
    J Dairy Sci; 2019 Apr; 102(4):3216-3229. PubMed ID: 30772032
    [TBL] [Abstract][Full Text] [Related]  

  • 57. MMR: a tool for read multi-mapper resolution.
    Kahles A; Behr J; Rätsch G
    Bioinformatics; 2016 Mar; 32(5):770-2. PubMed ID: 26519503
    [TBL] [Abstract][Full Text] [Related]  

  • 58. Accurate self-correction of errors in long reads using de Bruijn graphs.
    Salmela L; Walve R; Rivals E; Ukkonen E
    Bioinformatics; 2017 Mar; 33(6):799-806. PubMed ID: 27273673
    [TBL] [Abstract][Full Text] [Related]  

  • 59. Vargas: heuristic-free alignment for assessing linear and graph read aligners.
    Darby CA; Gaddipati R; Schatz MC; Langmead B
    Bioinformatics; 2020 Jun; 36(12):3712-3718. PubMed ID: 32321164
    [TBL] [Abstract][Full Text] [Related]  

  • 60. rasbhari: Optimizing Spaced Seeds for Database Searching, Read Mapping and Alignment-Free Sequence Comparison.
    Hahn L; Leimeister CA; Ounit R; Lonardi S; Morgenstern B
    PLoS Comput Biol; 2016 Oct; 12(10):e1005107. PubMed ID: 27760124
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 9.