These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

123 related articles for article (PubMed ID: 33576396)

  • 41. OCTAL: Optimal Completion of gene trees in polynomial time.
    Christensen S; Molloy EK; Vachaspati P; Warnow T
    Algorithms Mol Biol; 2018; 13():6. PubMed ID: 29568323
    [TBL] [Abstract][Full Text] [Related]  

  • 42. BBCA: Improving the scalability of *BEAST using random binning.
    Zimmermann T; Mirarab S; Warnow T
    BMC Genomics; 2014; 15 Suppl 6(Suppl 6):S11. PubMed ID: 25572469
    [TBL] [Abstract][Full Text] [Related]  

  • 43. Larger, unfiltered datasets are more effective at resolving phylogenetic conflict: Introns, exons, and UCEs resolve ambiguities in Golden-backed frogs (Anura: Ranidae; genus Hylarana).
    Chan KO; Hutter CR; Wood PL; Grismer LL; Brown RM
    Mol Phylogenet Evol; 2020 Oct; 151():106899. PubMed ID: 32590046
    [TBL] [Abstract][Full Text] [Related]  

  • 44. Estimating optimal species trees from incomplete gene trees under deep coalescence.
    Bayzid MS; Warnow T
    J Comput Biol; 2012 Jun; 19(6):591-605. PubMed ID: 22697236
    [TBL] [Abstract][Full Text] [Related]  

  • 45. Computing the probability of gene trees concordant with the species tree in the multispecies coalescent.
    Truszkowski J; Scornavacca C; Pardi F
    Theor Popul Biol; 2021 Feb; 137():22-31. PubMed ID: 33333117
    [TBL] [Abstract][Full Text] [Related]  

  • 46. Completing gene trees without species trees in sub-quadratic time.
    Mai U; Mirarab S
    Bioinformatics; 2022 Mar; 38(6):1532-1541. PubMed ID: 34978565
    [TBL] [Abstract][Full Text] [Related]  

  • 47. Non-parametric correction of estimated gene trees using TRACTION.
    Christensen S; Molloy EK; Vachaspati P; Yammanuru A; Warnow T
    Algorithms Mol Biol; 2020; 15():1. PubMed ID: 31911812
    [TBL] [Abstract][Full Text] [Related]  

  • 48. Weighting by Gene Tree Uncertainty Improves Accuracy of Quartet-based Species Trees.
    Zhang C; Mirarab S
    Mol Biol Evol; 2022 Dec; 39(12):. PubMed ID: 36201617
    [TBL] [Abstract][Full Text] [Related]  

  • 49. Whole-Genome Analyses Resolve the Phylogeny of Flightless Birds (Palaeognathae) in the Presence of an Empirical Anomaly Zone.
    Cloutier A; Sackton TB; Grayson P; Clamp M; Baker AJ; Edwards SV
    Syst Biol; 2019 Nov; 68(6):937-955. PubMed ID: 31135914
    [TBL] [Abstract][Full Text] [Related]  

  • 50. Evaluating Summary Methods for Multilocus Species Tree Estimation in the Presence of Incomplete Lineage Sorting.
    Mirarab S; Bayzid MS; Warnow T
    Syst Biol; 2016 May; 65(3):366-80. PubMed ID: 25164915
    [TBL] [Abstract][Full Text] [Related]  

  • 51. Forcing external constraints on tree inference using ASTRAL.
    Rabiee M; Mirarab S
    BMC Genomics; 2020 Apr; 21(Suppl 2):218. PubMed ID: 32299337
    [TBL] [Abstract][Full Text] [Related]  

  • 52. Testing for Polytomies in Phylogenetic Species Trees Using Quartet Frequencies.
    Sayyari E; Mirarab S
    Genes (Basel); 2018 Feb; 9(3):. PubMed ID: 29495636
    [TBL] [Abstract][Full Text] [Related]  

  • 53. A matter of phylogenetic scale: Distinguishing incomplete lineage sorting from lateral gene transfer as the cause of gene tree discord in recent versus deep diversification histories.
    Knowles LL; Huang H; Sukumaran J; Smith SA
    Am J Bot; 2018 Mar; 105(3):376-384. PubMed ID: 29710372
    [TBL] [Abstract][Full Text] [Related]  

  • 54. DISCO+QR: rooting species trees in the presence of GDL and ILS.
    Willson J; Tabatabaee Y; Liu B; Warnow T
    Bioinform Adv; 2023; 3(1):vbad015. PubMed ID: 36789293
    [TBL] [Abstract][Full Text] [Related]  

  • 55. Concatenation Analyses in the Presence of Incomplete Lineage Sorting.
    Warnow T
    PLoS Curr; 2015 May; 7():. PubMed ID: 26064786
    [TBL] [Abstract][Full Text] [Related]  

  • 56. Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte Carlo.
    Kapli P; Lutteropp S; Zhang J; Kobert K; Pavlidis P; Stamatakis A; Flouri T
    Bioinformatics; 2017 Jun; 33(11):1630-1638. PubMed ID: 28108445
    [TBL] [Abstract][Full Text] [Related]  

  • 57. Partitioned coalescence support reveals biases in species-tree methods and detects gene trees that determine phylogenomic conflicts.
    Gatesy J; Sloan DB; Warren JM; Baker RH; Simmons MP; Springer MS
    Mol Phylogenet Evol; 2019 Oct; 139():106539. PubMed ID: 31226465
    [TBL] [Abstract][Full Text] [Related]  

  • 58. MAGUS: Multiple sequence Alignment using Graph clUStering.
    Smirnov V; Warnow T
    Bioinformatics; 2021 Jul; 37(12):1666-1672. PubMed ID: 33252662
    [TBL] [Abstract][Full Text] [Related]  

  • 59. Modern Phylogenomics: Building Phylogenetic Trees Using the Multispecies Coalescent Model.
    Liu L; Anderson C; Pearl D; Edwards SV
    Methods Mol Biol; 2019; 1910():211-239. PubMed ID: 31278666
    [TBL] [Abstract][Full Text] [Related]  

  • 60. STELLS2: fast and accurate coalescent-based maximum likelihood inference of species trees from gene tree topologies.
    Pei J; Wu Y
    Bioinformatics; 2017 Jun; 33(12):1789-1797. PubMed ID: 28186220
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 7.