These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

280 related articles for article (PubMed ID: 33588028)

  • 1. CIRCexplorer pipelines for circRNA annotation and quantification from non-polyadenylated RNA-seq datasets.
    Ma XK; Xue W; Chen LL; Yang L
    Methods; 2021 Dec; 196():3-10. PubMed ID: 33588028
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Genome-Wide Annotation of circRNAs and Their Alternative Back-Splicing/Splicing with CIRCexplorer Pipeline.
    Dong R; Ma XK; Chen LL; Yang L
    Methods Mol Biol; 2019; 1870():137-149. PubMed ID: 30539552
    [TBL] [Abstract][Full Text] [Related]  

  • 3. CIRCexplorer3: A CLEAR Pipeline for Direct Comparison of Circular and Linear RNA Expression.
    Ma XK; Wang MR; Liu CX; Dong R; Carmichael GG; Chen LL; Yang L
    Genomics Proteomics Bioinformatics; 2019 Oct; 17(5):511-521. PubMed ID: 31904419
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Screening circular RNAs with functional potential using the RfxCas13d/BSJ-gRNA system.
    Li S; Wu H; Chen LL
    Nat Protoc; 2022 Sep; 17(9):2085-2107. PubMed ID: 35831613
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Assessing the impacts of various factors on circular RNA reliability.
    Chuang TJ; Chiang TW; Chen CY
    Life Sci Alliance; 2023 May; 6(5):. PubMed ID: 36849251
    [TBL] [Abstract][Full Text] [Related]  

  • 6. CircRNAFisher: a systematic computational approach for de novo circular RNA identification.
    Jia GY; Wang DL; Xue MZ; Liu YW; Pei YC; Yang YQ; Xu JM; Liang YC; Wang P
    Acta Pharmacol Sin; 2019 Jan; 40(1):55-63. PubMed ID: 30013032
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Knockout of circRNAs by base editing back-splice sites of circularized exons.
    Gao X; Ma XK; Li X; Li GW; Liu CX; Zhang J; Wang Y; Wei J; Chen J; Chen LL; Yang L
    Genome Biol; 2022 Jan; 23(1):16. PubMed ID: 35012611
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Bioinformatic Analysis of CircRNA from RNA-seq Datasets.
    Cochran KR; Gorospe M; De S
    Methods Mol Biol; 2022; 2399():9-19. PubMed ID: 35604551
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Insights into the biogenesis and potential functions of exonic circular RNA.
    Ragan C; Goodall GJ; Shirokikh NE; Preiss T
    Sci Rep; 2019 Feb; 9(1):2048. PubMed ID: 30765711
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Diverse alternative back-splicing and alternative splicing landscape of circular RNAs.
    Zhang XO; Dong R; Zhang Y; Zhang JL; Luo Z; Zhang J; Chen LL; Yang L
    Genome Res; 2016 Sep; 26(9):1277-87. PubMed ID: 27365365
    [TBL] [Abstract][Full Text] [Related]  

  • 11. circMeta: a unified computational framework for genomic feature annotation and differential expression analysis of circular RNAs.
    Chen L; Wang F; Bruggeman EC; Li C; Yao B
    Bioinformatics; 2020 Jan; 36(2):539-545. PubMed ID: 31373611
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Base-Editor-Mediated circRNA Knockout by Targeting Predominantly Back-Splice Sites.
    Ma XK; Gao X; Cao M; Yang L
    Methods Mol Biol; 2024; 2765():193-208. PubMed ID: 38381341
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Genome-wide identification of circular RNAs in peanut (Arachis hypogaea L.).
    Zhang X; Ma X; Ning L; Li Z; Zhao K; Li K; He J; Yin D
    BMC Genomics; 2019 Aug; 20(1):653. PubMed ID: 31416415
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Regulation of circRNA biogenesis.
    Chen LL; Yang L
    RNA Biol; 2015; 12(4):381-8. PubMed ID: 25746834
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Approaches and challenges in genome-wide circular RNA identification and quantification.
    Ma XK; Zhai SN; Yang L
    Trends Genet; 2023 Dec; 39(12):897-907. PubMed ID: 37839990
    [TBL] [Abstract][Full Text] [Related]  

  • 16. The Functional Circular RNA Screening via RfxCas13d/BSJ-gRNA System.
    Wu H; Chen LL
    Methods Mol Biol; 2024; 2765():173-191. PubMed ID: 38381340
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Reverse complementary matches simultaneously promote both back-splicing and exon-skipping.
    Cao D
    BMC Genomics; 2021 Aug; 22(1):586. PubMed ID: 34344317
    [TBL] [Abstract][Full Text] [Related]  

  • 18. SRRM4 Expands the Repertoire of Circular RNAs by Regulating Microexon Inclusion.
    Conn VM; Gabryelska M; Marri S; Stringer BW; Ormsby RJ; Penn T; Poonnoose S; Kichenadasse G; Conn SJ
    Cells; 2020 Nov; 9(11):. PubMed ID: 33207694
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Ularcirc: visualization and enhanced analysis of circular RNAs via back and canonical forward splicing.
    Humphreys DT; Fossat N; Demuth M; Tam PPL; Ho JWK
    Nucleic Acids Res; 2019 Nov; 47(20):e123. PubMed ID: 31435647
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Reconstruction of circular RNAs using Illumina and Nanopore RNA-seq datasets.
    Zhang J; Zhao F
    Methods; 2021 Dec; 196():17-22. PubMed ID: 33781864
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 14.