BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

263 related articles for article (PubMed ID: 33588028)

  • 1. CIRCexplorer pipelines for circRNA annotation and quantification from non-polyadenylated RNA-seq datasets.
    Ma XK; Xue W; Chen LL; Yang L
    Methods; 2021 Dec; 196():3-10. PubMed ID: 33588028
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Genome-Wide Annotation of circRNAs and Their Alternative Back-Splicing/Splicing with CIRCexplorer Pipeline.
    Dong R; Ma XK; Chen LL; Yang L
    Methods Mol Biol; 2019; 1870():137-149. PubMed ID: 30539552
    [TBL] [Abstract][Full Text] [Related]  

  • 3. CIRCexplorer3: A CLEAR Pipeline for Direct Comparison of Circular and Linear RNA Expression.
    Ma XK; Wang MR; Liu CX; Dong R; Carmichael GG; Chen LL; Yang L
    Genomics Proteomics Bioinformatics; 2019 Oct; 17(5):511-521. PubMed ID: 31904419
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Screening circular RNAs with functional potential using the RfxCas13d/BSJ-gRNA system.
    Li S; Wu H; Chen LL
    Nat Protoc; 2022 Sep; 17(9):2085-2107. PubMed ID: 35831613
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Knockout of circRNAs by base editing back-splice sites of circularized exons.
    Gao X; Ma XK; Li X; Li GW; Liu CX; Zhang J; Wang Y; Wei J; Chen J; Chen LL; Yang L
    Genome Biol; 2022 Jan; 23(1):16. PubMed ID: 35012611
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Assessing the impacts of various factors on circular RNA reliability.
    Chuang TJ; Chiang TW; Chen CY
    Life Sci Alliance; 2023 May; 6(5):. PubMed ID: 36849251
    [TBL] [Abstract][Full Text] [Related]  

  • 7. CircRNAFisher: a systematic computational approach for de novo circular RNA identification.
    Jia GY; Wang DL; Xue MZ; Liu YW; Pei YC; Yang YQ; Xu JM; Liang YC; Wang P
    Acta Pharmacol Sin; 2019 Jan; 40(1):55-63. PubMed ID: 30013032
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Insights into the biogenesis and potential functions of exonic circular RNA.
    Ragan C; Goodall GJ; Shirokikh NE; Preiss T
    Sci Rep; 2019 Feb; 9(1):2048. PubMed ID: 30765711
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Bioinformatic Analysis of CircRNA from RNA-seq Datasets.
    Cochran KR; Gorospe M; De S
    Methods Mol Biol; 2022; 2399():9-19. PubMed ID: 35604551
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Diverse alternative back-splicing and alternative splicing landscape of circular RNAs.
    Zhang XO; Dong R; Zhang Y; Zhang JL; Luo Z; Zhang J; Chen LL; Yang L
    Genome Res; 2016 Sep; 26(9):1277-87. PubMed ID: 27365365
    [TBL] [Abstract][Full Text] [Related]  

  • 11. circMeta: a unified computational framework for genomic feature annotation and differential expression analysis of circular RNAs.
    Chen L; Wang F; Bruggeman EC; Li C; Yao B
    Bioinformatics; 2020 Jan; 36(2):539-545. PubMed ID: 31373611
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Base-Editor-Mediated circRNA Knockout by Targeting Predominantly Back-Splice Sites.
    Ma XK; Gao X; Cao M; Yang L
    Methods Mol Biol; 2024; 2765():193-208. PubMed ID: 38381341
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Genome-wide identification of circular RNAs in peanut (Arachis hypogaea L.).
    Zhang X; Ma X; Ning L; Li Z; Zhao K; Li K; He J; Yin D
    BMC Genomics; 2019 Aug; 20(1):653. PubMed ID: 31416415
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Approaches and challenges in genome-wide circular RNA identification and quantification.
    Ma XK; Zhai SN; Yang L
    Trends Genet; 2023 Dec; 39(12):897-907. PubMed ID: 37839990
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Regulation of circRNA biogenesis.
    Chen LL; Yang L
    RNA Biol; 2015; 12(4):381-8. PubMed ID: 25746834
    [TBL] [Abstract][Full Text] [Related]  

  • 16. The Functional Circular RNA Screening via RfxCas13d/BSJ-gRNA System.
    Wu H; Chen LL
    Methods Mol Biol; 2024; 2765():173-191. PubMed ID: 38381340
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Reverse complementary matches simultaneously promote both back-splicing and exon-skipping.
    Cao D
    BMC Genomics; 2021 Aug; 22(1):586. PubMed ID: 34344317
    [TBL] [Abstract][Full Text] [Related]  

  • 18. SRRM4 Expands the Repertoire of Circular RNAs by Regulating Microexon Inclusion.
    Conn VM; Gabryelska M; Marri S; Stringer BW; Ormsby RJ; Penn T; Poonnoose S; Kichenadasse G; Conn SJ
    Cells; 2020 Nov; 9(11):. PubMed ID: 33207694
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Ularcirc: visualization and enhanced analysis of circular RNAs via back and canonical forward splicing.
    Humphreys DT; Fossat N; Demuth M; Tam PPL; Ho JWK
    Nucleic Acids Res; 2019 Nov; 47(20):e123. PubMed ID: 31435647
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Reconstruction of circular RNAs using Illumina and Nanopore RNA-seq datasets.
    Zhang J; Zhao F
    Methods; 2021 Dec; 196():17-22. PubMed ID: 33781864
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 14.