BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

241 related articles for article (PubMed ID: 33600481)

  • 1. Development of a program for in silico optimized selection of oligonucleotide-based molecular barcodes.
    Yang IS; Bae SW; Park B; Kim S
    PLoS One; 2021; 16(2):e0246354. PubMed ID: 33600481
    [TBL] [Abstract][Full Text] [Related]  

  • 2. BARCOSEL: a tool for selecting an optimal barcode set for high-throughput sequencing.
    Somervuo P; Koskinen P; Mei P; Holm L; Auvinen P; Paulin L
    BMC Bioinformatics; 2018 Jul; 19(1):257. PubMed ID: 29976145
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Next-generation DNA barcoding: using next-generation sequencing to enhance and accelerate DNA barcode capture from single specimens.
    Shokralla S; Gibson JF; Nikbakht H; Janzen DH; Hallwachs W; Hajibabaei M
    Mol Ecol Resour; 2014 Sep; 14(5):892-901. PubMed ID: 24641208
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Pheniqs 2.0: accurate, high-performance Bayesian decoding and confidence estimation for combinatorial barcode indexing.
    Galanti L; Shasha D; Gunsalus KC
    BMC Bioinformatics; 2021 Jul; 22(1):359. PubMed ID: 34215187
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Generalized DNA barcode design based on Hamming codes.
    Bystrykh LV
    PLoS One; 2012; 7(5):e36852. PubMed ID: 22615825
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Indel-correcting DNA barcodes for high-throughput sequencing.
    Hawkins JA; Jones SK; Finkelstein IJ; Press WH
    Proc Natl Acad Sci U S A; 2018 Jul; 115(27):E6217-E6226. PubMed ID: 29925596
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Scalable Combinatorial Assembly of Synthetic DNA for Tracking Applications.
    Stuart JD; Wickenkamp NR; Davis KA; Meyer C; Kading RC; Snow CD
    Int J Mol Sci; 2023 Jan; 24(3):. PubMed ID: 36768872
    [TBL] [Abstract][Full Text] [Related]  

  • 8. DNABarcodes: an R package for the systematic construction of DNA sample tags.
    Buschmann T
    Bioinformatics; 2017 Mar; 33(6):920-922. PubMed ID: 28052927
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Large-scale DNA Barcode Library Generation for Biomolecule Identification in High-throughput Screens.
    Lyons E; Sheridan P; Tremmel G; Miyano S; Sugano S
    Sci Rep; 2017 Oct; 7(1):13899. PubMed ID: 29066821
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Digital RNA sequencing minimizes sequence-dependent bias and amplification noise with optimized single-molecule barcodes.
    Shiroguchi K; Jia TZ; Sims PA; Xie XS
    Proc Natl Acad Sci U S A; 2012 Jan; 109(4):1347-52. PubMed ID: 22232676
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Insertion and deletion correcting DNA barcodes based on watermarks.
    Kracht D; Schober S
    BMC Bioinformatics; 2015 Feb; 16():50. PubMed ID: 25887410
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Constructing DNA Barcode Sets Based on Particle Swarm Optimization.
    Wang B; Zheng X; Zhou S; Zhou C; Wei X; Zhang Q; Wei Z
    IEEE/ACM Trans Comput Biol Bioinform; 2018; 15(3):999-1002. PubMed ID: 28287980
    [TBL] [Abstract][Full Text] [Related]  

  • 13. BC-store: A program for MGISEQ barcode sets analysis.
    Bulusheva I; Belova V; Nikashin B; Korostin D
    PLoS One; 2021; 16(3):e0247532. PubMed ID: 33647037
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Best Practices in Designing, Sequencing, and Identifying Random DNA Barcodes.
    Johnson MS; Venkataram S; Kryazhimskiy S
    J Mol Evol; 2023 Jun; 91(3):263-280. PubMed ID: 36651964
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Selection of marker genes for genetic barcoding of microorganisms and binning of metagenomic reads by Barcoder software tools.
    Rotimi AM; Pierneef R; Reva ON
    BMC Bioinformatics; 2018 Aug; 19(1):309. PubMed ID: 30165813
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Longer is Not Always Better: Optimizing Barcode Length for Large-Scale Species Discovery and Identification.
    Yeo D; Srivathsan A; Meier R
    Syst Biol; 2020 Sep; 69(5):999-1015. PubMed ID: 32065638
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Tabu Variable Neighborhood Search for Designing DNA Barcodes.
    Wang B; Zhang Q; Wei X
    IEEE Trans Nanobioscience; 2020 Jan; 19(1):127-131. PubMed ID: 31581087
    [TBL] [Abstract][Full Text] [Related]  

  • 18. The efficacy and further functional advantages of random-base molecular barcodes for absolute and digital quantification of nucleic acid molecules.
    Ogawa T; Kryukov K; Imanishi T; Shiroguchi K
    Sci Rep; 2017 Oct; 7(1):13576. PubMed ID: 29051542
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Filling reference gaps via assembling DNA barcodes using high-throughput sequencing-moving toward barcoding the world.
    Liu S; Yang C; Zhou C; Zhou X
    Gigascience; 2017 Dec; 6(12):1-8. PubMed ID: 29077841
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Development of a sequencing system for spatial decoding of DNA barcode molecules at single-molecule resolution.
    Oguchi Y; Shintaku H; Uemura S
    Commun Biol; 2020 Dec; 3(1):788. PubMed ID: 33339962
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 13.