These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

171 related articles for article (PubMed ID: 33616668)

  • 1. QMaker: Fast and Accurate Method to Estimate Empirical Models of Protein Evolution.
    Minh BQ; Dang CC; Vinh LS; Lanfear R
    Syst Biol; 2021 Aug; 70(5):1046-1060. PubMed ID: 33616668
    [TBL] [Abstract][Full Text] [Related]  

  • 2. nQMaker: Estimating Time Nonreversible Amino Acid Substitution Models.
    Dang CC; Minh BQ; McShea H; Masel J; James JE; Vinh LS; Lanfear R
    Syst Biol; 2022 Aug; 71(5):1110-1123. PubMed ID: 35139203
    [TBL] [Abstract][Full Text] [Related]  

  • 3. QMix: An Efficient Program to Automatically Estimate Multi-Matrix Mixture Models for Amino Acid Substitution Process.
    Tinh NH; Dang CC; Vinh LS
    J Comput Biol; 2024 Aug; 31(8):703-707. PubMed ID: 38860371
    [TBL] [Abstract][Full Text] [Related]  

  • 4. An improved general amino acid replacement matrix.
    Le SQ; Gascuel O
    Mol Biol Evol; 2008 Jul; 25(7):1307-20. PubMed ID: 18367465
    [TBL] [Abstract][Full Text] [Related]  

  • 5. FastMG: a simple, fast, and accurate maximum likelihood procedure to estimate amino acid replacement rate matrices from large data sets.
    Dang CC; Le VS; Gascuel O; Hazes B; Le QS
    BMC Bioinformatics; 2014 Oct; 15(1):341. PubMed ID: 25344302
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Data-specific substitution models improve protein-based phylogenetics.
    Brazão JM; Foster PG; Cox CJ
    PeerJ; 2023; 11():e15716. PubMed ID: 37576497
    [TBL] [Abstract][Full Text] [Related]  

  • 7. An amino acid substitution-selection model adjusts residue fitness to improve phylogenetic estimation.
    Wang HC; Susko E; Roger AJ
    Mol Biol Evol; 2014 Apr; 31(4):779-92. PubMed ID: 24441033
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Phylogenetic mixture models for proteins.
    Le SQ; Lartillot N; Gascuel O
    Philos Trans R Soc Lond B Biol Sci; 2008 Dec; 363(1512):3965-76. PubMed ID: 18852096
    [TBL] [Abstract][Full Text] [Related]  

  • 9. IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era.
    Minh BQ; Schmidt HA; Chernomor O; Schrempf D; Woodhams MD; von Haeseler A; Lanfear R
    Mol Biol Evol; 2020 May; 37(5):1530-1534. PubMed ID: 32011700
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A class frequency mixture model that adjusts for site-specific amino acid frequencies and improves inference of protein phylogeny.
    Wang HC; Li K; Susko E; Roger AJ
    BMC Evol Biol; 2008 Dec; 8():331. PubMed ID: 19087270
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Empirical models for substitution in ribosomal RNA.
    Smith AD; Lui TW; Tillier ER
    Mol Biol Evol; 2004 Mar; 21(3):419-27. PubMed ID: 14660689
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Bayesian coestimation of phylogeny and sequence alignment.
    Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
    BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Modeling Site Heterogeneity with Posterior Mean Site Frequency Profiles Accelerates Accurate Phylogenomic Estimation.
    Wang HC; Minh BQ; Susko E; Roger AJ
    Syst Biol; 2018 Mar; 67(2):216-235. PubMed ID: 28950365
    [TBL] [Abstract][Full Text] [Related]  

  • 14. GTRpmix: A Linked General Time-Reversible Model for Profile Mixture Models.
    Banos H; Wong TKF; Daneau J; Susko E; Minh BQ; Lanfear R; Brown MW; Eme L; Roger AJ
    Mol Biol Evol; 2024 Sep; 41(9):. PubMed ID: 39158305
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach.
    Whelan S; Goldman N
    Mol Biol Evol; 2001 May; 18(5):691-9. PubMed ID: 11319253
    [TBL] [Abstract][Full Text] [Related]  

  • 16. GHOST: Recovering Historical Signal from Heterotachously Evolved Sequence Alignments.
    Crotty SM; Minh BQ; Bean NG; Holland BR; Tuke J; Jermiin LS; Haeseler AV
    Syst Biol; 2020 Mar; 69(2):249-264. PubMed ID: 31364711
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Improving phylogenetic inference with a semiempirical amino acid substitution model.
    Zoller S; Schneider A
    Mol Biol Evol; 2013 Feb; 30(2):469-79. PubMed ID: 23002090
    [TBL] [Abstract][Full Text] [Related]  

  • 18. SATe-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees.
    Liu K; Warnow TJ; Holder MT; Nelesen SM; Yu J; Stamatakis AP; Linder CR
    Syst Biol; 2012 Jan; 61(1):90-106. PubMed ID: 22139466
    [TBL] [Abstract][Full Text] [Related]  

  • 19. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies.
    Nguyen LT; Schmidt HA; von Haeseler A; Minh BQ
    Mol Biol Evol; 2015 Jan; 32(1):268-74. PubMed ID: 25371430
    [TBL] [Abstract][Full Text] [Related]  

  • 20. FLU, an amino acid substitution model for influenza proteins.
    Dang CC; Le QS; Gascuel O; Le VS
    BMC Evol Biol; 2010 Apr; 10():99. PubMed ID: 20384985
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.