BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

204 related articles for article (PubMed ID: 33634313)

  • 1. A sequence-based deep learning approach to predict CTCF-mediated chromatin loop.
    Lv H; Dao FY; Zulfiqar H; Su W; Ding H; Liu L; Lin H
    Brief Bioinform; 2021 Sep; 22(5):. PubMed ID: 33634313
    [TBL] [Abstract][Full Text] [Related]  

  • 2. CLNN-loop: a deep learning model to predict CTCF-mediated chromatin loops in the different cell lines and CTCF-binding sites (CBS) pair types.
    Zhang P; Wu Y; Zhou H; Zhou B; Zhang H; Wu H
    Bioinformatics; 2022 Sep; 38(19):4497-4504. PubMed ID: 35997565
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Deep Learning of Sequence Patterns for CCCTC-Binding Factor-Mediated Chromatin Loop Formation.
    Kuang S; Wang L
    J Comput Biol; 2021 Feb; 28(2):133-145. PubMed ID: 33232622
    [No Abstract]   [Full Text] [Related]  

  • 4. Predicting CTCF-mediated chromatin loops using CTCF-MP.
    Zhang R; Wang Y; Yang Y; Zhang Y; Ma J
    Bioinformatics; 2018 Jul; 34(13):i133-i141. PubMed ID: 29949986
    [TBL] [Abstract][Full Text] [Related]  

  • 5. 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs.
    Ibn-Salem J; Andrade-Navarro MA
    BMC Genomics; 2019 Oct; 20(1):777. PubMed ID: 31653198
    [TBL] [Abstract][Full Text] [Related]  

  • 6. CCIP: predicting CTCF-mediated chromatin loops with transitivity.
    Wang W; Gao L; Ye Y; Gao Y
    Bioinformatics; 2021 Dec; 37(24):4635-4642. PubMed ID: 34289010
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Chromatin loop anchors are associated with genome instability in cancer and recombination hotspots in the germline.
    Kaiser VB; Semple CA
    Genome Biol; 2018 Jul; 19(1):101. PubMed ID: 30060743
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Systematic screening of CTCF binding partners identifies that BHLHE40 regulates CTCF genome-wide distribution and long-range chromatin interactions.
    Hu G; Dong X; Gong S; Song Y; Hutchins AP; Yao H
    Nucleic Acids Res; 2020 Sep; 48(17):9606-9620. PubMed ID: 32885250
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Distinct Classes of Chromatin Loops Revealed by Deletion of an RNA-Binding Region in CTCF.
    Hansen AS; Hsieh TS; Cattoglio C; Pustova I; Saldaña-Meyer R; Reinberg D; Darzacq X; Tjian R
    Mol Cell; 2019 Nov; 76(3):395-411.e13. PubMed ID: 31522987
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Be-1DCNN: a neural network model for chromatin loop prediction based on bagging ensemble learning.
    Wu H; Zhou B; Zhou H; Zhang P; Wang M
    Brief Funct Genomics; 2023 Nov; 22(5):475-484. PubMed ID: 37133976
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Predicting CTCF-mediated chromatin interactions by integrating genomic and epigenomic features.
    Kai Y; Andricovich J; Zeng Z; Zhu J; Tzatsos A; Peng W
    Nat Commun; 2018 Oct; 9(1):4221. PubMed ID: 30310060
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Variable Extent of Lineage-Specificity and Developmental Stage-Specificity of Cohesin and CCCTC-Binding Factor Binding Within the Immunoglobulin and T Cell Receptor Loci.
    Loguercio S; Barajas-Mora EM; Shih HY; Krangel MS; Feeney AJ
    Front Immunol; 2018; 9():425. PubMed ID: 29593713
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Robust CTCF-Based Chromatin Architecture Underpins Epigenetic Changes in the Heart Failure Stress-Gene Response.
    Lee DP; Tan WLW; Anene-Nzelu CG; Lee CJM; Li PY; Luu TDA; Chan CX; Tiang Z; Ng SL; Huang X; Efthymios M; Autio MI; Jiang J; Fullwood MJ; Prabhakar S; Lieberman Aiden E; Foo RS
    Circulation; 2019 Apr; 139(16):1937-1956. PubMed ID: 30717603
    [TBL] [Abstract][Full Text] [Related]  

  • 14. CTCF-Mediated Chromatin Loops between Promoter and Gene Body Regulate Alternative Splicing across Individuals.
    Ruiz-Velasco M; Kumar M; Lai MC; Bhat P; Solis-Pinson AB; Reyes A; Kleinsorg S; Noh KM; Gibson TJ; Zaugg JB
    Cell Syst; 2017 Dec; 5(6):628-637.e6. PubMed ID: 29199022
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Inferring CTCF-binding patterns and anchored loops across human tissues and cell types.
    Xu H; Yi X; Fan X; Wu C; Wang W; Chu X; Zhang S; Dong X; Wang Z; Wang J; Zhou Y; Zhao K; Yao H; Zheng N; Wang J; Chen Y; Plewczynski D; Sham PC; Chen K; Huang D; Li MJ
    Patterns (N Y); 2023 Aug; 4(8):100798. PubMed ID: 37602215
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Gain of CTCF-Anchored Chromatin Loops Marks the Exit from Naive Pluripotency.
    Pękowska A; Klaus B; Xiang W; Severino J; Daigle N; Klein FA; Oleś M; Casellas R; Ellenberg J; Steinmetz LM; Bertone P; Huber W
    Cell Syst; 2018 Nov; 7(5):482-495.e10. PubMed ID: 30414923
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Loop competition and extrusion model predicts CTCF interaction specificity.
    Xi W; Beer MA
    Nat Commun; 2021 Feb; 12(1):1046. PubMed ID: 33594051
    [TBL] [Abstract][Full Text] [Related]  

  • 18. CRISPR-mediated deletion of prostate cancer risk-associated CTCF loop anchors identifies repressive chromatin loops.
    Guo Y; Perez AA; Hazelett DJ; Coetzee GA; Rhie SK; Farnham PJ
    Genome Biol; 2018 Oct; 19(1):160. PubMed ID: 30296942
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A tour of 3D genome with a focus on CTCF.
    Wang DC; Wang W; Zhang L; Wang X
    Semin Cell Dev Biol; 2019 Jun; 90():4-11. PubMed ID: 30031214
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Genomic Marks Associated with Chromatin Compartments in the CTCF, RNAPII Loop and Genomic Windows.
    Szczepińska T; Mollah AF; Plewczynski D
    Int J Mol Sci; 2021 Oct; 22(21):. PubMed ID: 34769020
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.