214 related articles for article (PubMed ID: 33635857)
1. Balrog: A universal protein model for prokaryotic gene prediction.
Sommer MJ; Salzberg SL
PLoS Comput Biol; 2021 Feb; 17(2):e1008727. PubMed ID: 33635857
[TBL] [Abstract][Full Text] [Related]
2. MicrobeAnnotator: a user-friendly, comprehensive functional annotation pipeline for microbial genomes.
Ruiz-Perez CA; Conrad RE; Konstantinidis KT
BMC Bioinformatics; 2021 Jan; 22(1):11. PubMed ID: 33407081
[TBL] [Abstract][Full Text] [Related]
3. A De-Novo Genome Analysis Pipeline (DeNoGAP) for large-scale comparative prokaryotic genomics studies.
Thakur S; Guttman DS
BMC Bioinformatics; 2016 Jun; 17(1):260. PubMed ID: 27363390
[TBL] [Abstract][Full Text] [Related]
4. Prokaryotic Genome Annotation.
Kimbrel JA; Jeffrey BM; Ward CS
Methods Mol Biol; 2022; 2349():193-214. PubMed ID: 34718997
[TBL] [Abstract][Full Text] [Related]
5. [Comprehensive re-annotation of protein-coding genes for prokaryotic genomes by Z-curve and similarity-based methods].
Liu S; Zeng Z; Zeng FC; Du MZ
Yi Chuan; 2020 Jul; 42(7):691-702. PubMed ID: 32694108
[TBL] [Abstract][Full Text] [Related]
6. PanCoreGen - Profiling, detecting, annotating protein-coding genes in microbial genomes.
Paul S; Bhardwaj A; Bag SK; Sokurenko EV; Chattopadhyay S
Genomics; 2015 Dec; 106(6):367-72. PubMed ID: 26456591
[TBL] [Abstract][Full Text] [Related]
7. Re-annotation of genome microbial coding-sequences: finding new genes and inaccurately annotated genes.
Bocs S; Danchin A; Médigue C
BMC Bioinformatics; 2002; 3():5. PubMed ID: 11879526
[TBL] [Abstract][Full Text] [Related]
8. ISsaga is an ensemble of web-based methods for high throughput identification and semi-automatic annotation of insertion sequences in prokaryotic genomes.
Varani AM; Siguier P; Gourbeyre E; Charneau V; Chandler M
Genome Biol; 2011; 12(3):R30. PubMed ID: 21443786
[TBL] [Abstract][Full Text] [Related]
9. In Silico Prediction for ncRNAs in Prokaryotes.
Garcia AC
Methods Mol Biol; 2021; 2328():277-285. PubMed ID: 34251633
[TBL] [Abstract][Full Text] [Related]
10. GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions.
Besemer J; Lomsadze A; Borodovsky M
Nucleic Acids Res; 2001 Jun; 29(12):2607-18. PubMed ID: 11410670
[TBL] [Abstract][Full Text] [Related]
11. P finder: genomic and metagenomic annotation of RNase P RNA gene (rnpB).
Ellis JC
BMC Genomics; 2020 Apr; 21(1):334. PubMed ID: 32349659
[TBL] [Abstract][Full Text] [Related]
12. MED: a new non-supervised gene prediction algorithm for bacterial and archaeal genomes.
Zhu H; Hu GQ; Yang YF; Wang J; She ZS
BMC Bioinformatics; 2007 Mar; 8():97. PubMed ID: 17367537
[TBL] [Abstract][Full Text] [Related]
13. MicroScope-an integrated resource for community expertise of gene functions and comparative analysis of microbial genomic and metabolic data.
Médigue C; Calteau A; Cruveiller S; Gachet M; Gautreau G; Josso A; Lajus A; Langlois J; Pereira H; Planel R; Roche D; Rollin J; Rouy Z; Vallenet D
Brief Bioinform; 2019 Jul; 20(4):1071-1084. PubMed ID: 28968784
[TBL] [Abstract][Full Text] [Related]
14. Comparative Genomics for Prokaryotes.
Setubal JC; Almeida NF; Wattam AR
Methods Mol Biol; 2018; 1704():55-78. PubMed ID: 29277863
[TBL] [Abstract][Full Text] [Related]
15. ISEScan: automated identification of insertion sequence elements in prokaryotic genomes.
Xie Z; Tang H
Bioinformatics; 2017 Nov; 33(21):3340-3347. PubMed ID: 29077810
[TBL] [Abstract][Full Text] [Related]
16. Large-scale prokaryotic gene prediction and comparison to genome annotation.
Nielsen P; Krogh A
Bioinformatics; 2005 Dec; 21(24):4322-9. PubMed ID: 16249266
[TBL] [Abstract][Full Text] [Related]
17. DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication.
Tanizawa Y; Fujisawa T; Nakamura Y
Bioinformatics; 2018 Mar; 34(6):1037-1039. PubMed ID: 29106469
[TBL] [Abstract][Full Text] [Related]
18. Finding prokaryotic genes by the 'frame-by-frame' algorithm: targeting gene starts and overlapping genes.
Shmatkov AM; Melikyan AA; Chernousko FL; Borodovsky M
Bioinformatics; 1999 Nov; 15(11):874-86. PubMed ID: 10743554
[TBL] [Abstract][Full Text] [Related]
19. RefSeq microbial genomes database: new representation and annotation strategy.
Tatusova T; Ciufo S; Fedorov B; O'Neill K; Tolstoy I
Nucleic Acids Res; 2014 Jan; 42(Database issue):D553-9. PubMed ID: 24316578
[TBL] [Abstract][Full Text] [Related]
20.
; ; . PubMed ID:
[No Abstract] [Full Text] [Related]
[Next] [New Search]