BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

198 related articles for article (PubMed ID: 33669700)

  • 1. Long-Read Sequencing Improves the Detection of Structural Variations Impacting Complex Non-Coding Elements of the Genome.
    Begum G; Albanna A; Bankapur A; Nassir N; Tambi R; Berdiev BK; Akter H; Karuvantevida N; Kellam B; Alhashmi D; Sung WWL; Thiruvahindrapuram B; Alsheikh-Ali A; Scherer SW; Uddin M
    Int J Mol Sci; 2021 Feb; 22(4):. PubMed ID: 33669700
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Expectations and blind spots for structural variation detection from long-read assemblies and short-read genome sequencing technologies.
    Zhao X; Collins RL; Lee WP; Weber AM; Jun Y; Zhu Q; Weisburd B; Huang Y; Audano PA; Wang H; Walker M; Lowther C; Fu J; ; Gerstein MB; Devine SE; Marschall T; Korbel JO; Eichler EE; Chaisson MJP; Lee C; Mills RE; Brand H; Talkowski ME
    Am J Hum Genet; 2021 May; 108(5):919-928. PubMed ID: 33789087
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Oxford Nanopore and Bionano Genomics technologies evaluation for plant structural variation detection.
    Canaguier A; Guilbaud R; Denis E; Magdelenat G; Belser C; Istace B; Cruaud C; Wincker P; Le Paslier MC; Faivre-Rampant P; Barbe V
    BMC Genomics; 2022 Apr; 23(1):317. PubMed ID: 35448948
    [TBL] [Abstract][Full Text] [Related]  

  • 4. ONT long-read WGS for variant discovery and orthogonal confirmation of short read WGS derived genetic variants in clinical genetic testing.
    Kaplun L; Krautz-Peterson G; Neerman N; Stanley C; Hussey S; Folwick M; McGarry A; Weiss S; Kaplun A
    Front Genet; 2023; 14():1145285. PubMed ID: 37152986
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Comparison of structural variants detected by PacBio-CLR and ONT sequencing in pear.
    Liu Y; Zhang M; Wang R; Li B; Jiang Y; Sun M; Chang Y; Wu J
    BMC Genomics; 2022 Dec; 23(1):830. PubMed ID: 36517766
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Combined use of Oxford Nanopore and Illumina sequencing yields insights into soybean structural variation biology.
    Lemay MA; Sibbesen JA; Torkamaneh D; Hamel J; Levesque RC; Belzile F
    BMC Biol; 2022 Feb; 20(1):53. PubMed ID: 35197050
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Genome-wide detection of structural variation in some sheep breeds using whole-genome long-read sequencing data.
    Qiao G; Xu P; Guo T; He X; Yue Y; Yang B
    J Anim Breed Genet; 2024 Jul; 141(4):403-414. PubMed ID: 38247268
    [TBL] [Abstract][Full Text] [Related]  

  • 8. De novo genome assembly of a Han Chinese male and genome-wide detection of structural variants using Oxford Nanopore sequencing.
    Cai R; Dong Y; Fang M; Guo C; Ma X
    Mol Genet Genomics; 2020 Jul; 295(4):871-876. PubMed ID: 32274588
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Initial Analysis of Structural Variation Detections in Cattle Using Long-Read Sequencing Methods.
    Gao Y; Ma L; Liu GE
    Genes (Basel); 2022 May; 13(5):. PubMed ID: 35627213
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Genome sequencing in cytogenetics: Comparison of short-read and linked-read approaches for germline structural variant detection and characterization.
    Uguen K; Jubin C; Duffourd Y; Bardel C; Malan V; Dupont JM; El Khattabi L; Chatron N; Vitobello A; Rollat-Farnier PA; Baulard C; Lelorch M; Leduc A; Tisserant E; Tran Mau-Them F; Danjean V; Delepine M; Till M; Meyer V; Lyonnet S; Mosca-Boidron AL; Thevenon J; Faivre L; Thauvin-Robinet C; Schluth-Bolard C; Boland A; Olaso R; Callier P; Romana S; Deleuze JF; Sanlaville D
    Mol Genet Genomic Med; 2020 Mar; 8(3):e1114. PubMed ID: 31985172
    [TBL] [Abstract][Full Text] [Related]  

  • 11. SVsearcher: A more accurate structural variation detection method in long read data.
    Zheng Y; Shang X; Sung WK
    Comput Biol Med; 2023 May; 158():106843. PubMed ID: 37019014
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Detecting a long insertion variant in SAMD12 by SMRT sequencing: implications of long-read whole-genome sequencing for repeat expansion diseases.
    Mizuguchi T; Toyota T; Adachi H; Miyake N; Matsumoto N; Miyatake S
    J Hum Genet; 2019 Mar; 64(3):191-197. PubMed ID: 30559482
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A survey of algorithms for the detection of genomic structural variants from long-read sequencing data.
    Ahsan MU; Liu Q; Perdomo JE; Fang L; Wang K
    Nat Methods; 2023 Aug; 20(8):1143-1158. PubMed ID: 37386186
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Evaluation of Single-Molecule Sequencing Technologies for Structural Variant Detection in Two Swedish Human Genomes.
    Fatima N; Petri A; Gyllensten U; Feuk L; Ameur A
    Genes (Basel); 2020 Nov; 11(12):. PubMed ID: 33266238
    [TBL] [Abstract][Full Text] [Related]  

  • 15. LinkedSV for detection of mosaic structural variants from linked-read exome and genome sequencing data.
    Fang L; Kao C; Gonzalez MV; Mafra FA; Pellegrino da Silva R; Li M; Wenzel SS; Wimmer K; Hakonarson H; Wang K
    Nat Commun; 2019 Dec; 10(1):5585. PubMed ID: 31811119
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Whole-genome sequencing with long reads reveals complex structure and origin of structural variation in human genetic variations and somatic mutations in cancer.
    Fujimoto A; Wong JH; Yoshii Y; Akiyama S; Tanaka A; Yagi H; Shigemizu D; Nakagawa H; Mizokami M; Shimada M
    Genome Med; 2021 Apr; 13(1):65. PubMed ID: 33910608
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Precise characterization of somatic complex structural variations from tumor/control paired long-read sequencing data with nanomonsv.
    Shiraishi Y; Koya J; Chiba K; Okada A; Arai Y; Saito Y; Shibata T; Kataoka K
    Nucleic Acids Res; 2023 Aug; 51(14):e74. PubMed ID: 37336583
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Targeted long-read sequencing identifies and characterizes structural variants in cases of inherited platelet disorders.
    Zamora-Cánovas A; de la Morena-Barrio B; Marín-Quilez A; Sierra-Aisa C; Male C; Fernández-Mosteirin N; Trapero-Marugán M; Padilla J; Garrido-Rodriguez P; Sánchez-Fuentes A; Rodríguez-Alen A; Gómez-González PL; Revilla N; de la Morena-Barrio ME; Bastida JM; Corral J; Rivera J; Lozano ML
    J Thromb Haemost; 2024 Mar; 22(3):851-859. PubMed ID: 38007062
    [TBL] [Abstract][Full Text] [Related]  

  • 19. StrVCTVRE: A supervised learning method to predict the pathogenicity of human genome structural variants.
    Sharo AG; Hu Z; Sunyaev SR; Brenner SE
    Am J Hum Genet; 2022 Feb; 109(2):195-209. PubMed ID: 35032432
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Comparison and benchmark of structural variants detected from long read and long-read assembly.
    Lin J; Jia P; Wang S; Kosters W; Ye K
    Brief Bioinform; 2023 Jul; 24(4):. PubMed ID: 37200087
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.