101 related articles for article (PubMed ID: 33677492)
1. Tandem repeat interval pattern identifies animal taxa.
Bhattacharyya B; Mitra U; Bhattacharyya R
Bioinformatics; 2021 Aug; 37(16):2250-2258. PubMed ID: 33677492
[TBL] [Abstract][Full Text] [Related]
2. Dot2dot: accurate whole-genome tandem repeats discovery.
Genovese LM; Mosca MM; Pellegrini M; Geraci F
Bioinformatics; 2019 Mar; 35(6):914-922. PubMed ID: 30165507
[TBL] [Abstract][Full Text] [Related]
3. TRTools: a toolkit for genome-wide analysis of tandem repeats.
Mousavi N; Margoliash J; Pusarla N; Saini S; Yanicky R; Gymrek M
Bioinformatics; 2021 May; 37(5):731-733. PubMed ID: 32805020
[TBL] [Abstract][Full Text] [Related]
4. Tally-2.0: upgraded validator of tandem repeat detection in protein sequences.
Perovic V; Leclercq JY; Sumonja N; Richard FD; Veljkovic N; Kajava AV
Bioinformatics; 2020 May; 36(10):3260-3262. PubMed ID: 32096820
[TBL] [Abstract][Full Text] [Related]
5. TRviz: a Python library for decomposing and visualizing tandem repeat sequences.
Park J; Kaufman E; Valdmanis PN; Bafna V
Bioinform Adv; 2023; 3(1):vbad058. PubMed ID: 37168281
[TBL] [Abstract][Full Text] [Related]
6. Genome-wide analysis of tandem repeats in Daphnia pulex--a comparative approach.
Mayer C; Leese F; Tollrian R
BMC Genomics; 2010 Apr; 11():277. PubMed ID: 20433735
[TBL] [Abstract][Full Text] [Related]
7. Physical location of tandem repeats in the wheat genome and application for chromosome identification.
Lang T; Li G; Wang H; Yu Z; Chen Q; Yang E; Fu S; Tang Z; Yang Z
Planta; 2019 Mar; 249(3):663-675. PubMed ID: 30357506
[TBL] [Abstract][Full Text] [Related]
8. A versatile palindromic amphipathic repeat coding sequence horizontally distributed among diverse bacterial and eucaryotic microbes.
Röske K; Foecking MF; Yooseph S; Glass JI; Calcutt MJ; Wise KS
BMC Genomics; 2010 Jul; 11():430. PubMed ID: 20626840
[TBL] [Abstract][Full Text] [Related]
9. TRStalker: an efficient heuristic for finding fuzzy tandem repeats.
Pellegrini M; Renda ME; Vecchio A
Bioinformatics; 2010 Jun; 26(12):i358-66. PubMed ID: 20529928
[TBL] [Abstract][Full Text] [Related]
10. Alpha-CENTAURI: assessing novel centromeric repeat sequence variation with long read sequencing.
Sevim V; Bashir A; Chin CS; Miga KH
Bioinformatics; 2016 Jul; 32(13):1921-1924. PubMed ID: 27153570
[TBL] [Abstract][Full Text] [Related]
11. Tally: a scoring tool for boundary determination between repetitive and non-repetitive protein sequences.
Richard FD; Alves R; Kajava AV
Bioinformatics; 2016 Jul; 32(13):1952-8. PubMed ID: 27153701
[TBL] [Abstract][Full Text] [Related]
12. qmotif: determination of telomere content from whole-genome sequence data.
Holmes O; Nones K; Tang YH; Loffler KA; Lee M; Patch AM; Dagg RA; Lau LMS; Leonard C; Wood S; Xu Q; Pickett HA; Reddel RR; Barbour AP; Grimmond SM; Waddell N; Pearson JV
Bioinform Adv; 2022; 2(1):vbac005. PubMed ID: 36699384
[TBL] [Abstract][Full Text] [Related]
13. PhyloWGA: chromosome-aware phylogenetic interrogation of whole genome alignments.
Adams RH; Castoe TA; DeGiorgio M
Bioinformatics; 2021 Jul; 37(13):1923-1925. PubMed ID: 33051672
[TBL] [Abstract][Full Text] [Related]
14. Detection of Highly Divergent Tandem Repeats in the Rice Genome.
Korotkov EV; Kamionskya AM; Korotkova MA
Genes (Basel); 2021 Mar; 12(4):. PubMed ID: 33806152
[TBL] [Abstract][Full Text] [Related]
15. Repeat-aware evaluation of scaffolding tools.
Mandric I; Knyazev S; Zelikovsky A
Bioinformatics; 2018 Aug; 34(15):2530-2537. PubMed ID: 29547882
[TBL] [Abstract][Full Text] [Related]
16. Deep conservation of human protein tandem repeats within the eukaryotes.
Schaper E; Gascuel O; Anisimova M
Mol Biol Evol; 2014 May; 31(5):1132-48. PubMed ID: 24497029
[TBL] [Abstract][Full Text] [Related]
17. RepLong: de novo repeat identification using long read sequencing data.
Guo R; Li YR; He S; Ou-Yang L; Sun Y; Zhu Z
Bioinformatics; 2018 Apr; 34(7):1099-1107. PubMed ID: 29126180
[TBL] [Abstract][Full Text] [Related]
18. The evolution and function of protein tandem repeats in plants.
Schaper E; Anisimova M
New Phytol; 2015 Apr; 206(1):397-410. PubMed ID: 25420631
[TBL] [Abstract][Full Text] [Related]
19. Statistical approaches to detecting and analyzing tandem repeats in genomic sequences.
Anisimova M; Pečerska J; Schaper E
Front Bioeng Biotechnol; 2015; 3():31. PubMed ID: 25853125
[TBL] [Abstract][Full Text] [Related]
20. Revealing aperiodic aspects of solenoid proteins from sequence information.
Hrabe T; Jaroszewski L; Godzik A
Bioinformatics; 2016 Sep; 32(18):2776-82. PubMed ID: 27334472
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]