BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

133 related articles for article (PubMed ID: 33693546)

  • 1. Omixer: multivariate and reproducible sample randomization to proactively counter batch effects in omics studies.
    Sinke L; Cats D; Heijmans BT
    Bioinformatics; 2021 Sep; 37(18):3051-3052. PubMed ID: 33693546
    [TBL] [Abstract][Full Text] [Related]  

  • 2. MultiBaC: an R package to remove batch effects in multi-omic experiments.
    Ugidos M; Nueda MJ; Prats-Montalbán JM; Ferrer A; Conesa A; Tarazona S
    Bioinformatics; 2022 Apr; 38(9):2657-2658. PubMed ID: 35238331
    [TBL] [Abstract][Full Text] [Related]  

  • 3. ggCyto: next generation open-source visualization software for cytometry.
    Van P; Jiang W; Gottardo R; Finak G
    Bioinformatics; 2018 Nov; 34(22):3951-3953. PubMed ID: 29868771
    [TBL] [Abstract][Full Text] [Related]  

  • 4. schex avoids overplotting for large single-cell RNA-sequencing datasets.
    Freytag S; Lister R
    Bioinformatics; 2020 Apr; 36(7):2291-2292. PubMed ID: 31794001
    [TBL] [Abstract][Full Text] [Related]  

  • 5. BatchQC: interactive software for evaluating sample and batch effects in genomic data.
    Manimaran S; Selby HM; Okrah K; Ruberman C; Leek JT; Quackenbush J; Haibe-Kains B; Bravo HC; Johnson WE
    Bioinformatics; 2016 Dec; 32(24):3836-3838. PubMed ID: 27540268
    [TBL] [Abstract][Full Text] [Related]  

  • 6. HilbertCurve: an R/Bioconductor package for high-resolution visualization of genomic data.
    Gu Z; Eils R; Schlesner M
    Bioinformatics; 2016 Aug; 32(15):2372-4. PubMed ID: 27153599
    [TBL] [Abstract][Full Text] [Related]  

  • 7. psygenet2r: a R/Bioconductor package for the analysis of psychiatric disease genes.
    Gutiérrez-Sacristán A; Hernández-Ferrer C; González JR; Furlong LI
    Bioinformatics; 2017 Dec; 33(24):4004-4006. PubMed ID: 28961763
    [TBL] [Abstract][Full Text] [Related]  

  • 8. RankProd 2.0: a refactored bioconductor package for detecting differentially expressed features in molecular profiling datasets.
    Del Carratore F; Jankevics A; Eisinga R; Heskes T; Hong F; Breitling R
    Bioinformatics; 2017 Sep; 33(17):2774-2775. PubMed ID: 28481966
    [TBL] [Abstract][Full Text] [Related]  

  • 9. MoleculeExperiment enables consistent infrastructure for molecule-resolved spatial omics data in bioconductor.
    Peters Couto BZ; Robertson N; Patrick E; Ghazanfar S
    Bioinformatics; 2023 Sep; 39(9):. PubMed ID: 37698995
    [TBL] [Abstract][Full Text] [Related]  

  • 10. PrInCE: an R/Bioconductor package for protein-protein interaction network inference from co-fractionation mass spectrometry data.
    Skinnider MA; Cai C; Stacey RG; Foster LJ
    Bioinformatics; 2021 Sep; 37(17):2775-2777. PubMed ID: 33471077
    [TBL] [Abstract][Full Text] [Related]  

  • 11. DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature encoding.
    Chiu TP; Comoglio F; Zhou T; Yang L; Paro R; Rohs R
    Bioinformatics; 2016 Apr; 32(8):1211-3. PubMed ID: 26668005
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Reproducible and replicable comparisons using SummarizedBenchmark.
    Kimes PK; Reyes A
    Bioinformatics; 2019 Jan; 35(1):137-139. PubMed ID: 30016409
    [TBL] [Abstract][Full Text] [Related]  

  • 13. UMI4Cats: an R package to analyze chromatin contact profiles obtained by UMI-4C.
    Ramos-Rodríguez M; Subirana-Granés M; Pasquali L
    Bioinformatics; 2021 Nov; 37(22):4240-4242. PubMed ID: 34009302
    [TBL] [Abstract][Full Text] [Related]  

  • 14. primirTSS: an R package for identifying cell-specific microRNA transcription start sites.
    Li P; Xu Q; Hua X; Xie Z; Li J; Wang J
    Bioinformatics; 2020 Jun; 36(11):3605-3606. PubMed ID: 32170928
    [TBL] [Abstract][Full Text] [Related]  

  • 15. GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, miRNA and mRNA data in GDC.
    Li R; Qu H; Wang S; Wei J; Zhang L; Ma R; Lu J; Zhu J; Zhong WD; Jia Z
    Bioinformatics; 2018 Jul; 34(14):2515-2517. PubMed ID: 29509844
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Complex heatmaps reveal patterns and correlations in multidimensional genomic data.
    Gu Z; Eils R; Schlesner M
    Bioinformatics; 2016 Sep; 32(18):2847-9. PubMed ID: 27207943
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Fast randomization of large genomic datasets while preserving alteration counts.
    Gobbi A; Iorio F; Dawson KJ; Wedge DC; Tamborero D; Alexandrov LB; Lopez-Bigas N; Garnett MJ; Jurman G; Saez-Rodriguez J
    Bioinformatics; 2014 Sep; 30(17):i617-23. PubMed ID: 25161255
    [TBL] [Abstract][Full Text] [Related]  

  • 18. methylGSA: a Bioconductor package and Shiny app for DNA methylation data length bias adjustment in gene set testing.
    Ren X; Kuan PF
    Bioinformatics; 2019 Jun; 35(11):1958-1959. PubMed ID: 30346483
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Testing clonal relatedness of two tumors from the same patient based on their mutational profiles: update of the Clonality R package.
    Mauguen A; Seshan VE; Begg CB; Ostrovnaya I
    Bioinformatics; 2019 Nov; 35(22):4776-4778. PubMed ID: 31198957
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Metapone: a Bioconductor package for joint pathway testing for untargeted metabolomics data.
    Tian L; Li Z; Ma G; Zhang X; Tang Z; Wang S; Kang J; Liang D; Yu T
    Bioinformatics; 2022 Jul; 38(14):3662-3664. PubMed ID: 35639952
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.