155 related articles for article (PubMed ID: 33693841)
1. RNAMotifContrast: a method to discover and visualize RNA structural motif subfamilies.
Islam S; Rahaman MM; Zhang S
Nucleic Acids Res; 2021 Jun; 49(11):e61. PubMed ID: 33693841
[TBL] [Abstract][Full Text] [Related]
2. Exploring the repertoire of RNA secondary motifs using graph theory; implications for RNA design.
Gan HH; Pasquali S; Schlick T
Nucleic Acids Res; 2003 Jun; 31(11):2926-43. PubMed ID: 12771219
[TBL] [Abstract][Full Text] [Related]
3. RNAMotifComp: a comprehensive method to analyze and identify structurally similar RNA motif families.
Rahaman MM; Khan NS; Zhang S
Bioinformatics; 2023 Jun; 39(39 Suppl 1):i337-i346. PubMed ID: 37387191
[TBL] [Abstract][Full Text] [Related]
4. RAG: RNA-As-Graphs web resource.
Fera D; Kim N; Shiffeldrim N; Zorn J; Laserson U; Gan HH; Schlick T
BMC Bioinformatics; 2004 Jul; 5():88. PubMed ID: 15238163
[TBL] [Abstract][Full Text] [Related]
5. RNAMotifScanX: a graph alignment approach for RNA structural motif identification.
Zhong C; Zhang S
RNA; 2015 Mar; 21(3):333-46. PubMed ID: 25595715
[TBL] [Abstract][Full Text] [Related]
6. Automated classification of RNA 3D motifs and the RNA 3D Motif Atlas.
Petrov AI; Zirbel CL; Leontis NB
RNA; 2013 Oct; 19(10):1327-40. PubMed ID: 23970545
[TBL] [Abstract][Full Text] [Related]
7. Predicting candidate genomic sequences that correspond to synthetic functional RNA motifs.
Laserson U; Gan HH; Schlick T
Nucleic Acids Res; 2005; 33(18):6057-69. PubMed ID: 16254081
[TBL] [Abstract][Full Text] [Related]
8. IncMD: incremental trie-based structural motif discovery algorithm.
Badr G; Al-Turaiki I; Turcotte M; Mathkour H
J Bioinform Comput Biol; 2014 Oct; 12(5):1450027. PubMed ID: 25362841
[TBL] [Abstract][Full Text] [Related]
9. Classification and Identification of Non-canonical Base Pairs and Structural Motifs.
Sarrazin-Gendron R; Waldispühl J; Reinharz V
Methods Mol Biol; 2024; 2726():143-168. PubMed ID: 38780731
[TBL] [Abstract][Full Text] [Related]
10. RNAMotifScan: automatic identification of RNA structural motifs using secondary structural alignment.
Zhong C; Tang H; Zhang S
Nucleic Acids Res; 2010 Oct; 38(18):e176. PubMed ID: 20696653
[TBL] [Abstract][Full Text] [Related]
11. The RNA 3D Motif Atlas: Computational methods for extraction, organization and evaluation of RNA motifs.
Parlea LG; Sweeney BA; Hosseini-Asanjan M; Zirbel CL; Leontis NB
Methods; 2016 Jul; 103():99-119. PubMed ID: 27125735
[TBL] [Abstract][Full Text] [Related]
12. De novo discovery of structural motifs in RNA 3D structures through clustering.
Ge P; Islam S; Zhong C; Zhang S
Nucleic Acids Res; 2018 May; 46(9):4783-4793. PubMed ID: 29534235
[TBL] [Abstract][Full Text] [Related]
13. ssHMM: extracting intuitive sequence-structure motifs from high-throughput RNA-binding protein data.
Heller D; Krestel R; Ohler U; Vingron M; Marsico A
Nucleic Acids Res; 2017 Nov; 45(19):11004-11018. PubMed ID: 28977546
[TBL] [Abstract][Full Text] [Related]
14. Computational approaches for the discovery of splicing regulatory RNA structures.
Andrews RJ; Moss WN
Biochim Biophys Acta Gene Regul Mech; 2019; 1862(11-12):194380. PubMed ID: 31048028
[TBL] [Abstract][Full Text] [Related]
15. FR3D: finding local and composite recurrent structural motifs in RNA 3D structures.
Sarver M; Zirbel CL; Stombaugh J; Mokdad A; Leontis NB
J Math Biol; 2008 Jan; 56(1-2):215-52. PubMed ID: 17694311
[TBL] [Abstract][Full Text] [Related]
16. A novel motif discovery algorithm for identifying protein families.
Wei R; Gao L; Zhang T
Protein Pept Lett; 2010 Oct; 17(10):1215-22. PubMed ID: 20518741
[TBL] [Abstract][Full Text] [Related]
17. Using sequence signatures and kink-turn motifs in knowledge-based statistical potentials for RNA structure prediction.
Bayrak CS; Kim N; Schlick T
Nucleic Acids Res; 2017 May; 45(9):5414-5422. PubMed ID: 28158755
[TBL] [Abstract][Full Text] [Related]
18. Candidates for novel RNA topologies.
Kim N; Shiffeldrim N; Gan HH; Schlick T
J Mol Biol; 2004 Aug; 341(5):1129-44. PubMed ID: 15321711
[TBL] [Abstract][Full Text] [Related]
19. Adventures with RNA graphs.
Schlick T
Methods; 2018 Jul; 143():16-33. PubMed ID: 29621619
[TBL] [Abstract][Full Text] [Related]
20. Informatic resources for identifying and annotating structural RNA motifs.
George AD; Tenenbaum SA
Mol Biotechnol; 2009 Feb; 41(2):180-93. PubMed ID: 18979204
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
