377 related articles for article (PubMed ID: 33705711)
1. Cooperative binding between distant transcription factors is a hallmark of active enhancers.
Rao S; Ahmad K; Ramachandran S
Mol Cell; 2021 Apr; 81(8):1651-1665.e4. PubMed ID: 33705711
[TBL] [Abstract][Full Text] [Related]
2. Profiling Accessible Chromatin and Nucleosomes in the Mammalian Genome.
Lim HW; Iwafuchi M
Methods Mol Biol; 2023; 2599():59-68. PubMed ID: 36427143
[TBL] [Abstract][Full Text] [Related]
3. The chromatin remodeling protein Lsh alters nucleosome occupancy at putative enhancers and modulates binding of lineage specific transcription factors.
Ren J; Finney R; Ni K; Cam M; Muegge K
Epigenetics; 2019 Mar; 14(3):277-293. PubMed ID: 30861354
[TBL] [Abstract][Full Text] [Related]
4. Zelda overcomes the high intrinsic nucleosome barrier at enhancers during Drosophila zygotic genome activation.
Sun Y; Nien CY; Chen K; Liu HY; Johnston J; Zeitlinger J; Rushlow C
Genome Res; 2015 Nov; 25(11):1703-14. PubMed ID: 26335633
[TBL] [Abstract][Full Text] [Related]
5. Characterization of sequence determinants of enhancer function using natural genetic variation.
Yang MG; Ling E; Cowley CJ; Greenberg ME; Vierbuchen T
Elife; 2022 Aug; 11():. PubMed ID: 36043696
[TBL] [Abstract][Full Text] [Related]
6. Molecular Co-occupancy Identifies Transcription Factor Binding Cooperativity In Vivo.
Sönmezer C; Kleinendorst R; Imanci D; Barzaghi G; Villacorta L; Schübeler D; Benes V; Molina N; Krebs AR
Mol Cell; 2021 Jan; 81(2):255-267.e6. PubMed ID: 33290745
[TBL] [Abstract][Full Text] [Related]
7. Principles of nucleosome organization revealed by single-cell micrococcal nuclease sequencing.
Lai B; Gao W; Cui K; Xie W; Tang Q; Jin W; Hu G; Ni B; Zhao K
Nature; 2018 Oct; 562(7726):281-285. PubMed ID: 30258225
[TBL] [Abstract][Full Text] [Related]
8. Widespread changes in nucleosome accessibility without changes in nucleosome occupancy during a rapid transcriptional induction.
Mueller B; Mieczkowski J; Kundu S; Wang P; Sadreyev R; Tolstorukov MY; Kingston RE
Genes Dev; 2017 Mar; 31(5):451-462. PubMed ID: 28356342
[TBL] [Abstract][Full Text] [Related]
9. The transcription factor Grainy head primes epithelial enhancers for spatiotemporal activation by displacing nucleosomes.
Jacobs J; Atkins M; Davie K; Imrichova H; Romanelli L; Christiaens V; Hulselmans G; Potier D; Wouters J; Taskiran II; Paciello G; González-Blas CB; Koldere D; Aibar S; Halder G; Aerts S
Nat Genet; 2018 Jul; 50(7):1011-1020. PubMed ID: 29867222
[TBL] [Abstract][Full Text] [Related]
10. Pioneer Factor-Nucleosome Binding Events during Differentiation Are Motif Encoded.
Meers MP; Janssens DH; Henikoff S
Mol Cell; 2019 Aug; 75(3):562-575.e5. PubMed ID: 31253573
[TBL] [Abstract][Full Text] [Related]
11. Identifying cooperative transcription factors in yeast using multiple data sources.
Lai FJ; Jhu MH; Chiu CC; Huang YM; Wu WS
BMC Syst Biol; 2014; 8 Suppl 5(Suppl 5):S2. PubMed ID: 25559499
[TBL] [Abstract][Full Text] [Related]
12. An active tissue-specific enhancer and bound transcription factors existing in a precisely positioned nucleosomal array.
McPherson CE; Shim EY; Friedman DS; Zaret KS
Cell; 1993 Oct; 75(2):387-98. PubMed ID: 8402920
[TBL] [Abstract][Full Text] [Related]
13. Co-occupancy by multiple cardiac transcription factors identifies transcriptional enhancers active in heart.
He A; Kong SW; Ma Q; Pu WT
Proc Natl Acad Sci U S A; 2011 Apr; 108(14):5632-7. PubMed ID: 21415370
[TBL] [Abstract][Full Text] [Related]
14. Quantitative-enhancer-FACS-seq (QeFS) reveals epistatic interactions among motifs within transcriptional enhancers in developing Drosophila tissue.
Waters CT; Gisselbrecht SS; Sytnikova YA; Cafarelli TM; Hill DE; Bulyk ML
Genome Biol; 2021 Dec; 22(1):348. PubMed ID: 34930411
[TBL] [Abstract][Full Text] [Related]
15. Uncoupling evolutionary changes in DNA sequence, transcription factor occupancy and enhancer activity.
Khoueiry P; Girardot C; Ciglar L; Peng PC; Gustafson EH; Sinha S; Furlong EE
Elife; 2017 Aug; 6():. PubMed ID: 28792889
[TBL] [Abstract][Full Text] [Related]
16. Conventional and pioneer modes of glucocorticoid receptor interaction with enhancer chromatin in vivo.
Johnson TA; Chereji RV; Stavreva DA; Morris SA; Hager GL; Clark DJ
Nucleic Acids Res; 2018 Jan; 46(1):203-214. PubMed ID: 29126175
[TBL] [Abstract][Full Text] [Related]
17. Genome-Wide Mapping Targets of the Metazoan Chromatin Remodeling Factor NURF Reveals Nucleosome Remodeling at Enhancers, Core Promoters and Gene Insulators.
Kwon SY; Grisan V; Jang B; Herbert J; Badenhorst P
PLoS Genet; 2016 Apr; 12(4):e1005969. PubMed ID: 27046080
[TBL] [Abstract][Full Text] [Related]
18. Nucleosome-mediated cooperativity between transcription factors.
Mirny LA
Proc Natl Acad Sci U S A; 2010 Dec; 107(52):22534-9. PubMed ID: 21149679
[TBL] [Abstract][Full Text] [Related]
19. Transcription factor cooperativity in early adipogenic hotspots and super-enhancers.
Siersbæk R; Rabiee A; Nielsen R; Sidoli S; Traynor S; Loft A; Poulsen LC; Rogowska-Wrzesinska A; Jensen ON; Mandrup S
Cell Rep; 2014 Jun; 7(5):1443-1455. PubMed ID: 24857652
[TBL] [Abstract][Full Text] [Related]
20. Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors.
Wang J; Zhuang J; Iyer S; Lin X; Whitfield TW; Greven MC; Pierce BG; Dong X; Kundaje A; Cheng Y; Rando OJ; Birney E; Myers RM; Noble WS; Snyder M; Weng Z
Genome Res; 2012 Sep; 22(9):1798-812. PubMed ID: 22955990
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
