252 related articles for article (PubMed ID: 33712417)
1. A flexible repertoire of transcription factor binding sites and a diversity threshold determines enhancer activity in embryonic stem cells.
Singh G; Mullany S; Moorthy SD; Zhang R; Mehdi T; Tian R; Duncan AG; Moses AM; Mitchell JA
Genome Res; 2021 Apr; 31(4):564-575. PubMed ID: 33712417
[TBL] [Abstract][Full Text] [Related]
2. Transposable Elements and DNA Methylation Create in Embryonic Stem Cells Human-Specific Regulatory Sequences Associated with Distal Enhancers and Noncoding RNAs.
Glinsky GV
Genome Biol Evol; 2015 May; 7(6):1432-54. PubMed ID: 25956794
[TBL] [Abstract][Full Text] [Related]
3. Synthetic and genomic regulatory elements reveal aspects of
King DM; Hong CKY; Shepherdson JL; Granas DM; Maricque BB; Cohen BA
Elife; 2020 Feb; 9():. PubMed ID: 32043966
[TBL] [Abstract][Full Text] [Related]
4. Reciprocal transcriptional regulation of Pou5f1 and Sox2 via the Oct4/Sox2 complex in embryonic stem cells.
Chew JL; Loh YH; Zhang W; Chen X; Tam WL; Yeap LS; Li P; Ang YS; Lim B; Robson P; Ng HH
Mol Cell Biol; 2005 Jul; 25(14):6031-46. PubMed ID: 15988017
[TBL] [Abstract][Full Text] [Related]
5. Global identification of transcriptional regulators of pluripotency and differentiation in embryonic stem cells.
Won KJ; Xu Z; Zhang X; Whitaker JW; Shoemaker R; Ren B; Xu Y; Wang W
Nucleic Acids Res; 2012 Sep; 40(17):8199-209. PubMed ID: 22730289
[TBL] [Abstract][Full Text] [Related]
6. SOX2 co-occupies distal enhancer elements with distinct POU factors in ESCs and NPCs to specify cell state.
Lodato MA; Ng CW; Wamstad JA; Cheng AW; Thai KK; Fraenkel E; Jaenisch R; Boyer LA
PLoS Genet; 2013; 9(2):e1003288. PubMed ID: 23437007
[TBL] [Abstract][Full Text] [Related]
7. Master transcription factors and mediator establish super-enhancers at key cell identity genes.
Whyte WA; Orlando DA; Hnisz D; Abraham BJ; Lin CY; Kagey MH; Rahl PB; Lee TI; Young RA
Cell; 2013 Apr; 153(2):307-19. PubMed ID: 23582322
[TBL] [Abstract][Full Text] [Related]
8. Predicting distinct organization of transcription factor binding sites on the promoter regions: a new genome-based approach to expand human embryonic stem cell regulatory network.
Hosseinpour B; Bakhtiarizadeh MR; Khosravi P; Ebrahimie E
Gene; 2013 Dec; 531(2):212-9. PubMed ID: 24042128
[TBL] [Abstract][Full Text] [Related]
9. Analyzing bovine OCT4 and NANOG enhancer activity in pluripotent stem cells using fluorescent protein reporters.
Huang D; Wang L; Talbot NC; Huang C; Pu L; Zhao X; Tian X; Zhang M; Tang Y
PLoS One; 2018; 13(10):e0203923. PubMed ID: 30289916
[TBL] [Abstract][Full Text] [Related]
10. Enhancer identification in mouse embryonic stem cells using integrative modeling of chromatin and genomic features.
Chen CY; Morris Q; Mitchell JA
BMC Genomics; 2012 Apr; 13():152. PubMed ID: 22537144
[TBL] [Abstract][Full Text] [Related]
11. Pluripotency governed by Sox2 via regulation of Oct3/4 expression in mouse embryonic stem cells.
Masui S; Nakatake Y; Toyooka Y; Shimosato D; Yagi R; Takahashi K; Okochi H; Okuda A; Matoba R; Sharov AA; Ko MS; Niwa H
Nat Cell Biol; 2007 Jun; 9(6):625-35. PubMed ID: 17515932
[TBL] [Abstract][Full Text] [Related]
12. Transcription factors for the modulation of pluripotency and reprogramming.
Heng JC; Orlov YL; Ng HH
Cold Spring Harb Symp Quant Biol; 2010; 75():237-44. PubMed ID: 21047904
[TBL] [Abstract][Full Text] [Related]
13. Combinatorial binding in human and mouse embryonic stem cells identifies conserved enhancers active in early embryonic development.
Göke J; Jung M; Behrens S; Chavez L; O'Keeffe S; Timmermann B; Lehrach H; Adjaye J; Vingron M
PLoS Comput Biol; 2011 Dec; 7(12):e1002304. PubMed ID: 22215994
[TBL] [Abstract][Full Text] [Related]
14. Contribution of transposable elements and distal enhancers to evolution of human-specific features of interphase chromatin architecture in embryonic stem cells.
Glinsky GV
Chromosome Res; 2018 Mar; 26(1-2):61-84. PubMed ID: 29335803
[TBL] [Abstract][Full Text] [Related]
15. A machine learning approach for identifying novel cell type-specific transcriptional regulators of myogenesis.
Busser BW; Taher L; Kim Y; Tansey T; Bloom MJ; Ovcharenko I; Michelson AM
PLoS Genet; 2012; 8(3):e1002531. PubMed ID: 22412381
[TBL] [Abstract][Full Text] [Related]
16. A novel nodal enhancer dependent on pluripotency factors and smad2/3 signaling conditions a regulatory switch during epiblast maturation.
Papanayotou C; Benhaddou A; Camus A; Perea-Gomez A; Jouneau A; Mezger V; Langa F; Ott S; Sabéran-Djoneidi D; Collignon J
PLoS Biol; 2014 Jun; 12(6):e1001890. PubMed ID: 24960041
[TBL] [Abstract][Full Text] [Related]
17. FOXO1 is an essential regulator of pluripotency in human embryonic stem cells.
Zhang X; Yalcin S; Lee DF; Yeh TY; Lee SM; Su J; Mungamuri SK; Rimmelé P; Kennedy M; Sellers R; Landthaler M; Tuschl T; Chi NW; Lemischka I; Keller G; Ghaffari S
Nat Cell Biol; 2011 Jul; 13(9):1092-9. PubMed ID: 21804543
[TBL] [Abstract][Full Text] [Related]
18. CRISPR reveals a distal super-enhancer required for Sox2 expression in mouse embryonic stem cells.
Li Y; Rivera CM; Ishii H; Jin F; Selvaraj S; Lee AY; Dixon JR; Ren B
PLoS One; 2014; 9(12):e114485. PubMed ID: 25486255
[TBL] [Abstract][Full Text] [Related]
19. Rinf Regulates Pluripotency Network Genes and Tet Enzymes in Embryonic Stem Cells.
Ravichandran M; Lei R; Tang Q; Zhao Y; Lee J; Ma L; Chrysanthou S; Lorton BM; Cvekl A; Shechter D; Zheng D; Dawlaty MM
Cell Rep; 2019 Aug; 28(8):1993-2003.e5. PubMed ID: 31433977
[TBL] [Abstract][Full Text] [Related]
20. ConBind: motif-aware cross-species alignment for the identification of functional transcription factor binding sites.
Lelieveld SH; Schütte J; Dijkstra MJ; Bawono P; Kinston SJ; Göttgens B; Heringa J; Bonzanni N
Nucleic Acids Res; 2016 May; 44(8):e72. PubMed ID: 26721389
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
