219 related articles for article (PubMed ID: 33720735)
21. Protein Inference Using PIA Workflows and PSI Standard File Formats.
Uszkoreit J; Perez-Riverol Y; Eggers B; Marcus K; Eisenacher M
J Proteome Res; 2019 Feb; 18(2):741-747. PubMed ID: 30474983
[TBL] [Abstract][Full Text] [Related]
22. NFTest: automated testing of Nextflow pipelines.
Patel Y; Zhu C; Yamaguchi TN; Bugh YZ; Tian M; Holmes A; Fitz-Gibbon ST; Boutros PC
Bioinformatics; 2024 Feb; 40(2):. PubMed ID: 38341660
[TBL] [Abstract][Full Text] [Related]
23. Agile parallel bioinformatics workflow management using Pwrake.
Mishima H; Sasaki K; Tanaka M; Tatebe O; Yoshiura K
BMC Res Notes; 2011 Sep; 4():331. PubMed ID: 21899774
[TBL] [Abstract][Full Text] [Related]
24. Bio-TDS: bioscience query tool discovery system.
Gnimpieba EZ; VanDiermen MS; Gustafson SM; Conn B; Lushbough CM
Nucleic Acids Res; 2017 Jan; 45(D1):D1117-D1122. PubMed ID: 27924016
[TBL] [Abstract][Full Text] [Related]
25. PaDuA: A Python Library for High-Throughput (Phospho)proteomics Data Analysis.
Ressa A; Fitzpatrick M; van den Toorn H; Heck AJR; Altelaar M
J Proteome Res; 2019 Feb; 18(2):576-584. PubMed ID: 30525654
[TBL] [Abstract][Full Text] [Related]
26. APP: an Automated Proteomics Pipeline for the analysis of mass spectrometry data based on multiple open access tools.
Malm EK; Srivastava V; Sundqvist G; Bulone V
BMC Bioinformatics; 2014 Dec; 15(1):441. PubMed ID: 25547515
[TBL] [Abstract][Full Text] [Related]
27. Building Containerized Workflows Using the BioDepot-Workflow-Builder.
Hung LH; Hu J; Meiss T; Ingersoll A; Lloyd W; Kristiyanto D; Xiong Y; Sobie E; Yeung KY
Cell Syst; 2019 Nov; 9(5):508-514.e3. PubMed ID: 31521606
[TBL] [Abstract][Full Text] [Related]
28. WOMBAT-P: Benchmarking Label-Free Proteomics Data Analysis Workflows.
Bouyssié D; Altıner P; Capella-Gutierrez S; Fernández JM; Hagemeijer YP; Horvatovich P; Hubálek M; Levander F; Mauri P; Palmblad M; Raffelsberger W; Rodríguez-Navas L; Di Silvestre D; Kunkli BT; Uszkoreit J; Vandenbrouck Y; Vizcaíno JA; Winkelhardt D; Schwämmle V
J Proteome Res; 2024 Jan; 23(1):418-429. PubMed ID: 38038272
[TBL] [Abstract][Full Text] [Related]
29. Implementation of FAIR Practices in Computational Metabolomics Workflows-A Case Study.
Zulfiqar M; Crusoe MR; König-Ries B; Steinbeck C; Peters K; Gadelha L
Metabolites; 2024 Feb; 14(2):. PubMed ID: 38393009
[TBL] [Abstract][Full Text] [Related]
30. Tidyproteomics: an open-source R package and data object for quantitative proteomics post analysis and visualization.
Jones J; MacKrell EJ; Wang TY; Lomenick B; Roukes ML; Chou TF
BMC Bioinformatics; 2023 Jun; 24(1):239. PubMed ID: 37280522
[TBL] [Abstract][Full Text] [Related]
31. SciPipe: A workflow library for agile development of complex and dynamic bioinformatics pipelines.
Lampa S; Dahlö M; Alvarsson J; Spjuth O
Gigascience; 2019 May; 8(5):. PubMed ID: 31029061
[TBL] [Abstract][Full Text] [Related]
32. Anvaya: a workflows environment for automated genome analysis.
Limaye B; Banerjee R; Datta A; Inamdar H; Vats P; Dahale S; Bhandari A; Ramakrishnan EP; Tupakula R; Malviya S; Bayaskar A; Gadhari R; Jain S; Gavane V; Mahajan R; Sunitha K; Joshi R
J Bioinform Comput Biol; 2012 Aug; 10(4):1250006. PubMed ID: 22809419
[TBL] [Abstract][Full Text] [Related]
33. Identifying impact of software dependencies on replicability of biomedical workflows.
Miksa T; Rauber A; Mina E
J Biomed Inform; 2016 Dec; 64():232-254. PubMed ID: 27789415
[TBL] [Abstract][Full Text] [Related]
34. Trans-proteomic pipeline: a pipeline for proteomic analysis.
Pedrioli PG
Methods Mol Biol; 2010; 604():213-38. PubMed ID: 20013374
[TBL] [Abstract][Full Text] [Related]
35. One Thousand and One Software for Proteomics: Tales of the Toolmakers of Science.
Tsiamis V; Ienasescu HI; Gabrielaitis D; Palmblad M; Schwämmle V; Ison J
J Proteome Res; 2019 Oct; 18(10):3580-3585. PubMed ID: 31429284
[TBL] [Abstract][Full Text] [Related]
36. From the desktop to the grid: scalable bioinformatics via workflow conversion.
de la Garza L; Veit J; Szolek A; Röttig M; Aiche S; Gesing S; Reinert K; Kohlbacher O
BMC Bioinformatics; 2016 Mar; 17():127. PubMed ID: 26968893
[TBL] [Abstract][Full Text] [Related]
37. ReGaTE: Registration of Galaxy Tools in Elixir.
Doppelt-Azeroual O; Mareuil F; Deveaud E; Kalaš M; Soranzo N; van den Beek M; Grüning B; Ison J; Ménager H
Gigascience; 2017 Jun; 6(6):1-4. PubMed ID: 28402416
[TBL] [Abstract][Full Text] [Related]
38. Watchdog - a workflow management system for the distributed analysis of large-scale experimental data.
Kluge M; Friedel CC
BMC Bioinformatics; 2018 Mar; 19(1):97. PubMed ID: 29534677
[TBL] [Abstract][Full Text] [Related]
39. A qualitative assessment of using ChatGPT as large language model for scientific workflow development.
Sänger M; De Mecquenem N; Lewińska KE; Bountris V; Lehmann F; Leser U; Kosch T
Gigascience; 2024 Jan; 13():. PubMed ID: 38896539
[TBL] [Abstract][Full Text] [Related]
40. ThermoRawFileParser: Modular, Scalable, and Cross-Platform RAW File Conversion.
Hulstaert N; Shofstahl J; Sachsenberg T; Walzer M; Barsnes H; Martens L; Perez-Riverol Y
J Proteome Res; 2020 Jan; 19(1):537-542. PubMed ID: 31755270
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
