These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
151 related articles for article (PubMed ID: 33720766)
41. 4Cin: A computational pipeline for 3D genome modeling and virtual Hi-C analyses from 4C data. Irastorza-Azcarate I; Acemel RD; Tena JJ; Maeso I; Gómez-Skarmeta JL; Devos DP PLoS Comput Biol; 2018 Mar; 14(3):e1006030. PubMed ID: 29522512 [TBL] [Abstract][Full Text] [Related]
42. Evaluation of 3D Chromatin Interactions Using Hi-C. Hu G Methods Mol Biol; 2020; 2117():65-78. PubMed ID: 31960372 [TBL] [Abstract][Full Text] [Related]
43. A critical assessment of topologically associating domain prediction tools. Dali R; Blanchette M Nucleic Acids Res; 2017 Apr; 45(6):2994-3005. PubMed ID: 28334773 [TBL] [Abstract][Full Text] [Related]
44. Chromosome Three-Dimensional Structure Reconstruction: An Iterative ShRec3D Algorithm. Li FZ; Zhang XF; Cai HY; Ran LQ; Zhou HY; Liu ZE J Comput Biol; 2023 May; 30(5):575-587. PubMed ID: 36847350 [TBL] [Abstract][Full Text] [Related]
48. MSTD: an efficient method for detecting multi-scale topological domains from symmetric and asymmetric 3D genomic maps. Ye Y; Gao L; Zhang S Nucleic Acids Res; 2019 Jun; 47(11):e65. PubMed ID: 30941409 [TBL] [Abstract][Full Text] [Related]
49. Current status and future perspectives in bioinformatical analysis of Hi-C data. Lyu HQ; Hao LL; Liu EH; Wu ZF; Han JQ; Liu Y Yi Chuan; 2020 Jan; 42(1):87-99. PubMed ID: 31956099 [TBL] [Abstract][Full Text] [Related]
50. Manifold Based Optimization for Single-Cell 3D Genome Reconstruction. Paulsen J; Gramstad O; Collas P PLoS Comput Biol; 2015 Aug; 11(8):e1004396. PubMed ID: 26262780 [TBL] [Abstract][Full Text] [Related]
52. Three-dimensional chromatin ensemble reconstruction via stochastic embedding. Guarnera E; Tan ZW; Berezovsky IN Structure; 2021 Jun; 29(6):622-634.e3. PubMed ID: 33567266 [TBL] [Abstract][Full Text] [Related]
53. HiTAD: detecting the structural and functional hierarchies of topologically associating domains from chromatin interactions. Wang XT; Cui W; Peng C Nucleic Acids Res; 2017 Nov; 45(19):e163. PubMed ID: 28977529 [TBL] [Abstract][Full Text] [Related]
54. Mapping the spectrum of 3D communities in human chromosome conformation capture data. Lee SH; Kim Y; Lee S; Durang X; Stenberg P; Jeon JH; Lizana L Sci Rep; 2019 May; 9(1):6859. PubMed ID: 31048738 [TBL] [Abstract][Full Text] [Related]
55. Disruption of topologically associating domains by structural variations in tetraploid cottons. Long Y; Liu Z; Wang P; Yang H; Wang Y; Zhang S; Zhang X; Wang M Genomics; 2021 Sep; 113(5):3405-3414. PubMed ID: 34311045 [TBL] [Abstract][Full Text] [Related]
56. EVRC: reconstruction of chromosome 3D structure models using error-vector resultant algorithm with clustering coefficient. Wang X; Gu WC; Li J; Ma BG Bioinformatics; 2023 Nov; 39(11):. PubMed ID: 37847746 [TBL] [Abstract][Full Text] [Related]
57. Reconstruction of 3D genome architecture via a two-stage algorithm. Segal MR; Bengtsson HL BMC Bioinformatics; 2015 Nov; 16():373. PubMed ID: 26553003 [TBL] [Abstract][Full Text] [Related]
58. GRiNCH: simultaneous smoothing and detection of topological units of genome organization from sparse chromatin contact count matrices with matrix factorization. Lee DI; Roy S Genome Biol; 2021 May; 22(1):164. PubMed ID: 34034791 [TBL] [Abstract][Full Text] [Related]
59. Developing novel methods to image and visualize 3D genomes. Ma T; Chen L; Shi M; Niu J; Zhang X; Yang X; Zhanghao K; Wang M; Xi P; Jin D; Zhang M; Gao J Cell Biol Toxicol; 2018 Oct; 34(5):367-380. PubMed ID: 29577183 [TBL] [Abstract][Full Text] [Related]