185 related articles for article (PubMed ID: 33722934)
1. Transcription initiation mapping in 31 bovine tissues reveals complex promoter activity, pervasive transcription, and tissue-specific promoter usage.
Goszczynski DE; Halstead MM; Islas-Trejo AD; Zhou H; Ross PJ
Genome Res; 2021 Apr; 31(4):732-744. PubMed ID: 33722934
[TBL] [Abstract][Full Text] [Related]
2. Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species.
Kern C; Wang Y; Chitwood J; Korf I; Delany M; Cheng H; Medrano JF; Van Eenennaam AL; Ernst C; Ross P; Zhou H
BMC Genomics; 2018 Sep; 19(1):684. PubMed ID: 30227846
[TBL] [Abstract][Full Text] [Related]
3. A promoter-level mammalian expression atlas.
; Forrest AR; Kawaji H; Rehli M; Baillie JK; de Hoon MJ; Haberle V; Lassmann T; Kulakovskiy IV; Lizio M; Itoh M; Andersson R; Mungall CJ; Meehan TF; Schmeier S; Bertin N; Jørgensen M; Dimont E; Arner E; Schmidl C; Schaefer U; Medvedeva YA; Plessy C; Vitezic M; Severin J; Semple C; Ishizu Y; Young RS; Francescatto M; Alam I; Albanese D; Altschuler GM; Arakawa T; Archer JA; Arner P; Babina M; Rennie S; Balwierz PJ; Beckhouse AG; Pradhan-Bhatt S; Blake JA; Blumenthal A; Bodega B; Bonetti A; Briggs J; Brombacher F; Burroughs AM; Califano A; Cannistraci CV; Carbajo D; Chen Y; Chierici M; Ciani Y; Clevers HC; Dalla E; Davis CA; Detmar M; Diehl AD; Dohi T; Drabløs F; Edge AS; Edinger M; Ekwall K; Endoh M; Enomoto H; Fagiolini M; Fairbairn L; Fang H; Farach-Carson MC; Faulkner GJ; Favorov AV; Fisher ME; Frith MC; Fujita R; Fukuda S; Furlanello C; Furino M; Furusawa J; Geijtenbeek TB; Gibson AP; Gingeras T; Goldowitz D; Gough J; Guhl S; Guler R; Gustincich S; Ha TJ; Hamaguchi M; Hara M; Harbers M; Harshbarger J; Hasegawa A; Hasegawa Y; Hashimoto T; Herlyn M; Hitchens KJ; Ho Sui SJ; Hofmann OM; Hoof I; Hori F; Huminiecki L; Iida K; Ikawa T; Jankovic BR; Jia H; Joshi A; Jurman G; Kaczkowski B; Kai C; Kaida K; Kaiho A; Kajiyama K; Kanamori-Katayama M; Kasianov AS; Kasukawa T; Katayama S; Kato S; Kawaguchi S; Kawamoto H; Kawamura YI; Kawashima T; Kempfle JS; Kenna TJ; Kere J; Khachigian LM; Kitamura T; Klinken SP; Knox AJ; Kojima M; Kojima S; Kondo N; Koseki H; Koyasu S; Krampitz S; Kubosaki A; Kwon AT; Laros JF; Lee W; Lennartsson A; Li K; Lilje B; Lipovich L; Mackay-Sim A; Manabe R; Mar JC; Marchand B; Mathelier A; Mejhert N; Meynert A; Mizuno Y; de Lima Morais DA; Morikawa H; Morimoto M; Moro K; Motakis E; Motohashi H; Mummery CL; Murata M; Nagao-Sato S; Nakachi Y; Nakahara F; Nakamura T; Nakamura Y; Nakazato K; van Nimwegen E; Ninomiya N; Nishiyori H; Noma S; Noma S; Noazaki T; Ogishima S; Ohkura N; Ohimiya H; Ohno H; Ohshima M; Okada-Hatakeyama M; Okazaki Y; Orlando V; Ovchinnikov DA; Pain A; Passier R; Patrikakis M; Persson H; Piazza S; Prendergast JG; Rackham OJ; Ramilowski JA; Rashid M; Ravasi T; Rizzu P; Roncador M; Roy S; Rye MB; Saijyo E; Sajantila A; Saka A; Sakaguchi S; Sakai M; Sato H; Savvi S; Saxena A; Schneider C; Schultes EA; Schulze-Tanzil GG; Schwegmann A; Sengstag T; Sheng G; Shimoji H; Shimoni Y; Shin JW; Simon C; Sugiyama D; Sugiyama T; Suzuki M; Suzuki N; Swoboda RK; 't Hoen PA; Tagami M; Takahashi N; Takai J; Tanaka H; Tatsukawa H; Tatum Z; Thompson M; Toyodo H; Toyoda T; Valen E; van de Wetering M; van den Berg LM; Verado R; Vijayan D; Vorontsov IE; Wasserman WW; Watanabe S; Wells CA; Winteringham LN; Wolvetang E; Wood EJ; Yamaguchi Y; Yamamoto M; Yoneda M; Yonekura Y; Yoshida S; Zabierowski SE; Zhang PG; Zhao X; Zucchelli S; Summers KM; Suzuki H; Daub CO; Kawai J; Heutink P; Hide W; Freeman TC; Lenhard B; Bajic VB; Taylor MS; Makeev VJ; Sandelin A; Hume DA; Carninci P; Hayashizaki Y
Nature; 2014 Mar; 507(7493):462-70. PubMed ID: 24670764
[TBL] [Abstract][Full Text] [Related]
4. Antisense Transcription in Loci Associated to Hereditary Neurodegenerative Diseases.
Zucchelli S; Fedele S; Vatta P; Calligaris R; Heutink P; Rizzu P; Itoh M; Persichetti F; Santoro C; Kawaji H; Lassmann T; Hayashizaki Y; Carninci P; Forrest ARR; ; Gustincich S
Mol Neurobiol; 2019 Aug; 56(8):5392-5415. PubMed ID: 30610612
[TBL] [Abstract][Full Text] [Related]
5. Genome-wide determination of transcription start sites reveals new insights into promoter structures in the actinomycete Corynebacterium glutamicum.
Albersmeier A; Pfeifer-Sancar K; Rückert C; Kalinowski J
J Biotechnol; 2017 Sep; 257():99-109. PubMed ID: 28412515
[TBL] [Abstract][Full Text] [Related]
6. Promoter analysis reveals globally differential regulation of human long non-coding RNA and protein-coding genes.
Alam T; Medvedeva YA; Jia H; Brown JB; Lipovich L; Bajic VB
PLoS One; 2014; 9(10):e109443. PubMed ID: 25275320
[TBL] [Abstract][Full Text] [Related]
7. Integration of high-resolution promoter profiling assays reveals novel, cell type-specific transcription start sites across 115 human cell and tissue types.
Moore JE; Zhang XO; Elhajjajy SI; Fan K; Pratt HE; Reese F; Mortazavi A; Weng Z
Genome Res; 2022 Feb; 32(2):389-402. PubMed ID: 34949670
[TBL] [Abstract][Full Text] [Related]
8. Divergent transcription is associated with promoters of transcriptional regulators.
Lepoivre C; Belhocine M; Bergon A; Griffon A; Yammine M; Vanhille L; Zacarias-Cabeza J; Garibal MA; Koch F; Maqbool MA; Fenouil R; Loriod B; Holota H; Gut M; Gut I; Imbert J; Andrau JC; Puthier D; Spicuglia S
BMC Genomics; 2013 Dec; 14():914. PubMed ID: 24365181
[TBL] [Abstract][Full Text] [Related]
9. Improving the annotation of the cattle genome by annotating transcription start sites in a diverse set of tissues and populations using Cap Analysis Gene Expression sequencing.
Salavati M; Clark R; Becker D; Kühn C; Plastow G; Dupont S; Moreira GCM; Charlier C; Clark EL
G3 (Bethesda); 2023 Aug; 13(8):. PubMed ID: 37216666
[TBL] [Abstract][Full Text] [Related]
10. Identification of novel transcripts and noncoding RNAs in bovine skin by deep next generation sequencing.
Weikard R; Hadlich F; Kuehn C
BMC Genomics; 2013 Nov; 14():789. PubMed ID: 24225384
[TBL] [Abstract][Full Text] [Related]
11. Genome-wide transcription start site mapping of Bradyrhizobium japonicum grown free-living or in symbiosis - a rich resource to identify new transcripts, proteins and to study gene regulation.
Čuklina J; Hahn J; Imakaev M; Omasits U; Förstner KU; Ljubimov N; Goebel M; Pessi G; Fischer HM; Ahrens CH; Gelfand MS; Evguenieva-Hackenberg E
BMC Genomics; 2016 Apr; 17():302. PubMed ID: 27107716
[TBL] [Abstract][Full Text] [Related]
12. Local regulation of gene expression by lncRNA promoters, transcription and splicing.
Engreitz JM; Haines JE; Perez EM; Munson G; Chen J; Kane M; McDonel PE; Guttman M; Lander ES
Nature; 2016 Nov; 539(7629):452-455. PubMed ID: 27783602
[TBL] [Abstract][Full Text] [Related]
13. The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.
Derrien T; Johnson R; Bussotti G; Tanzer A; Djebali S; Tilgner H; Guernec G; Martin D; Merkel A; Knowles DG; Lagarde J; Veeravalli L; Ruan X; Ruan Y; Lassmann T; Carninci P; Brown JB; Lipovich L; Gonzalez JM; Thomas M; Davis CA; Shiekhattar R; Gingeras TR; Hubbard TJ; Notredame C; Harrow J; Guigó R
Genome Res; 2012 Sep; 22(9):1775-89. PubMed ID: 22955988
[TBL] [Abstract][Full Text] [Related]
14. A catalogue of novel bovine long noncoding RNA across 18 tissues.
Koufariotis LT; Chen YP; Chamberlain A; Vander Jagt C; Hayes BJ
PLoS One; 2015; 10(10):e0141225. PubMed ID: 26496443
[TBL] [Abstract][Full Text] [Related]
15. Chromatin signatures at transcriptional start sites separate two equally populated yet distinct classes of intergenic long noncoding RNAs.
Marques AC; Hughes J; Graham B; Kowalczyk MS; Higgs DR; Ponting CP
Genome Biol; 2013 Nov; 14(11):R131. PubMed ID: 24289259
[TBL] [Abstract][Full Text] [Related]
16. RAMPAGE: promoter activity profiling by paired-end sequencing of 5'-complete cDNAs.
Batut P; Gingeras TR
Curr Protoc Mol Biol; 2013 Nov; 104():Unit 25B.11. PubMed ID: 24510412
[TBL] [Abstract][Full Text] [Related]
17. A 5'-regulatory region and two coding region polymorphisms modulate promoter activity and gene expression of the growth suppressor gene ZBED6 in cattle.
Huang YZ; Li MX; Wang J; Zhan ZY; Sun YJ; Sun JJ; Li CJ; Lan XY; Lei CZ; Zhang CL; Chen H
PLoS One; 2013; 8(11):e79744. PubMed ID: 24223190
[TBL] [Abstract][Full Text] [Related]
18. Distinct patterns of epigenetic marks and transcription factor binding sites across promoters of sense-intronic long noncoding RNAs.
Ghosh S; Sati S; Sengupta S; Scaria V
J Genet; 2015 Mar; 94(1):17-25. PubMed ID: 25846873
[TBL] [Abstract][Full Text] [Related]
19. Genome-wide identification of transcription start sites, promoters and transcription factor binding sites in E. coli.
Mendoza-Vargas A; Olvera L; Olvera M; Grande R; Vega-Alvarado L; Taboada B; Jimenez-Jacinto V; Salgado H; Juárez K; Contreras-Moreira B; Huerta AM; Collado-Vides J; Morett E
PLoS One; 2009 Oct; 4(10):e7526. PubMed ID: 19838305
[TBL] [Abstract][Full Text] [Related]
20. Long noncoding RNA repertoire in chicken liver and adipose tissue.
Muret K; Klopp C; Wucher V; Esquerré D; Legeai F; Lecerf F; Désert C; Boutin M; Jehl F; Acloque H; Giuffra E; Djebali S; Foissac S; Derrien T; Lagarrigue S
Genet Sel Evol; 2017 Jan; 49(1):6. PubMed ID: 28073357
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
