These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
23. When whole-genome alignments just won't work: kSNP v2 software for alignment-free SNP discovery and phylogenetics of hundreds of microbial genomes. Gardner SN; Hall BG PLoS One; 2013; 8(12):e81760. PubMed ID: 24349125 [TBL] [Abstract][Full Text] [Related]
25. BRAKER3: Fully automated genome annotation using RNA-seq and protein evidence with GeneMark-ETP, AUGUSTUS, and TSEBRA. Gabriel L; Brůna T; Hoff KJ; Ebel M; Lomsadze A; Borodovsky M; Stanke M Genome Res; 2024 Jun; 34(5):769-777. PubMed ID: 38866550 [TBL] [Abstract][Full Text] [Related]
26. MicroScope-an integrated resource for community expertise of gene functions and comparative analysis of microbial genomic and metabolic data. Médigue C; Calteau A; Cruveiller S; Gachet M; Gautreau G; Josso A; Lajus A; Langlois J; Pereira H; Planel R; Roche D; Rollin J; Rouy Z; Vallenet D Brief Bioinform; 2019 Jul; 20(4):1071-1084. PubMed ID: 28968784 [TBL] [Abstract][Full Text] [Related]
27. DoriTool: A Bioinformatics Integrative Tool for Post-Association Functional Annotation. Martín-Antoniano I; Alonso L; Madrid M; López de Maturana E; Malats N Public Health Genomics; 2017; 20(2):126-135. PubMed ID: 28700989 [TBL] [Abstract][Full Text] [Related]
29. StandEnA: a customizable workflow for standardized annotation and generating a presence-absence matrix of proteins. Chafra F; Borim Correa F; Oni F; Konu Karakayalı Ö; Stadler PF; Nunes da Rocha U Bioinform Adv; 2023; 3(1):vbad069. PubMed ID: 37448812 [TBL] [Abstract][Full Text] [Related]
30. phiGENOME: an integrative navigation throughout bacteriophage genomes. Stano M; Klucar L Genomics; 2011 Nov; 98(5):376-80. PubMed ID: 21824513 [TBL] [Abstract][Full Text] [Related]
32. Genome Annotation Transfer Utility (GATU): rapid annotation of viral genomes using a closely related reference genome. Tcherepanov V; Ehlers A; Upton C BMC Genomics; 2006 Jun; 7():150. PubMed ID: 16772042 [TBL] [Abstract][Full Text] [Related]
33. Annotation of Bacteriophage Genome Sequences Using DNA Master: An Overview. Pope WH; Jacobs-Sera D Methods Mol Biol; 2018; 1681():217-229. PubMed ID: 29134598 [TBL] [Abstract][Full Text] [Related]
35. FA-nf: A Functional Annotation Pipeline for Proteins from Non-Model Organisms Implemented in Nextflow. Vlasova A; Hermoso Pulido T; Camara F; Ponomarenko J; Guigó R Genes (Basel); 2021 Oct; 12(10):. PubMed ID: 34681040 [TBL] [Abstract][Full Text] [Related]
36. MICheck: a web tool for fast checking of syntactic annotations of bacterial genomes. Cruveiller S; Le Saux J; Vallenet D; Lajus A; Bocs S; Médigue C Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W471-9. PubMed ID: 15980515 [TBL] [Abstract][Full Text] [Related]
37. Genome ARTIST_v2-An Autonomous Bioinformatics Tool for Annotation of Natural Transposons in Sequenced Genomes. Ecovoiu AA; Bologa AM; Chifiriuc DIM; Ciuca AM; Constantin ND; Ghionoiu IC; Ghita IC; Ratiu AC Int J Mol Sci; 2022 Oct; 23(20):. PubMed ID: 36293549 [TBL] [Abstract][Full Text] [Related]