388 related articles for article (PubMed ID: 33744284)
1. Recent advances in de novo protein design: Principles, methods, and applications.
Pan X; Kortemme T
J Biol Chem; 2021; 296():100558. PubMed ID: 33744284
[TBL] [Abstract][Full Text] [Related]
2. Principles and Methods in Computational Membrane Protein Design.
Vorobieva AA
J Mol Biol; 2021 Oct; 433(20):167154. PubMed ID: 34271008
[TBL] [Abstract][Full Text] [Related]
3. De novo backbone scaffolds for protein design.
MacDonald JT; Maksimiak K; Sadowski MI; Taylor WR
Proteins; 2010 Apr; 78(5):1311-25. PubMed ID: 20017215
[TBL] [Abstract][Full Text] [Related]
4. A Brief History of De Novo Protein Design: Minimal, Rational, and Computational.
Woolfson DN
J Mol Biol; 2021 Oct; 433(20):167160. PubMed ID: 34298061
[TBL] [Abstract][Full Text] [Related]
5. Open-access data: A cornerstone for artificial intelligence approaches to protein structure prediction.
Burley SK; Berman HM
Structure; 2021 Jun; 29(6):515-520. PubMed ID: 33984281
[TBL] [Abstract][Full Text] [Related]
6. Designing protein structures and complexes with the molecular modeling program Rosetta.
Kuhlman B
J Biol Chem; 2019 Dec; 294(50):19436-19443. PubMed ID: 31699898
[TBL] [Abstract][Full Text] [Related]
7. Computational approaches for rational design of proteins with novel functionalities.
Tiwari MK; Singh R; Singh RK; Kim IW; Lee JK
Comput Struct Biotechnol J; 2012; 2():e201209002. PubMed ID: 24688643
[TBL] [Abstract][Full Text] [Related]
8. The coming of age of de novo protein design.
Huang PS; Boyken SE; Baker D
Nature; 2016 Sep; 537(7620):320-7. PubMed ID: 27629638
[TBL] [Abstract][Full Text] [Related]
9. Computational protein design with backbone plasticity.
MacDonald JT; Freemont PS
Biochem Soc Trans; 2016 Oct; 44(5):1523-1529. PubMed ID: 27911735
[TBL] [Abstract][Full Text] [Related]
10. De Novo Protein Design Using the Blueprint Builder in Rosetta.
An L; Lee GR
Curr Protoc Protein Sci; 2020 Dec; 102(1):e116. PubMed ID: 33320432
[TBL] [Abstract][Full Text] [Related]
11. De novo protein design by inversion of the AlphaFold structure prediction network.
Goverde CA; Wolf B; Khakzad H; Rosset S; Correia BE
Protein Sci; 2023 Jun; 32(6):e4653. PubMed ID: 37165539
[TBL] [Abstract][Full Text] [Related]
12. Scoring functions for de novo protein structure prediction revisited.
Ngan SC; Hung LH; Liu T; Samudrala R
Methods Mol Biol; 2008; 413():243-81. PubMed ID: 18075169
[TBL] [Abstract][Full Text] [Related]
13. Perturbing the energy landscape for improved packing during computational protein design.
Maguire JB; Haddox HK; Strickland D; Halabiya SF; Coventry B; Griffin JR; Pulavarti SVSRK; Cummins M; Thieker DF; Klavins E; Szyperski T; DiMaio F; Baker D; Kuhlman B
Proteins; 2021 Apr; 89(4):436-449. PubMed ID: 33249652
[TBL] [Abstract][Full Text] [Related]
14. Forging the Basis for Developing Protein-Ligand Interaction Scoring Functions.
Liu Z; Su M; Han L; Liu J; Yang Q; Li Y; Wang R
Acc Chem Res; 2017 Feb; 50(2):302-309. PubMed ID: 28182403
[TBL] [Abstract][Full Text] [Related]
15. A generic framework for hierarchical de novo protein design.
Harteveld Z; Bonet J; Rosset S; Yang C; Sesterhenn F; Correia BE
Proc Natl Acad Sci U S A; 2022 Oct; 119(43):e2206111119. PubMed ID: 36252041
[TBL] [Abstract][Full Text] [Related]
16. An accurate binding interaction model in de novo computational protein design of interactions: if you build it, they will bind.
London N; Ambroggio X
J Struct Biol; 2014 Feb; 185(2):136-46. PubMed ID: 23558036
[TBL] [Abstract][Full Text] [Related]
17. Amino acid modifications for conformationally constraining naturally occurring and engineered peptide backbones: Insights from the Protein Data Bank.
Di Costanzo L; Dutta S; Burley SK
Biopolymers; 2018 Aug; 109(10):e23230. PubMed ID: 30368772
[TBL] [Abstract][Full Text] [Related]
18. De novo protein design-From new structures to programmable functions.
Kortemme T
Cell; 2024 Feb; 187(3):526-544. PubMed ID: 38306980
[TBL] [Abstract][Full Text] [Related]
19. Energy functions in de novo protein design: current challenges and future prospects.
Li Z; Yang Y; Zhan J; Dai L; Zhou Y
Annu Rev Biophys; 2013; 42():315-35. PubMed ID: 23451890
[TBL] [Abstract][Full Text] [Related]
20. Orientation-dependent backbone-only residue pair scoring functions for fixed backbone protein design.
Bordner AJ
BMC Bioinformatics; 2010 Apr; 11():192. PubMed ID: 20398384
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
