BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

175 related articles for article (PubMed ID: 33753204)

  • 1. Assessment of scoring functions to rank the quality of 3D subtomogram clusters from cryo-electron tomography.
    Singla J; White KL; Stevens RC; Alber F
    J Struct Biol; 2021 Jun; 213(2):107727. PubMed ID: 33753204
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Autofocused 3D classification of cryoelectron subtomograms.
    Chen Y; Pfeffer S; Fernández JJ; Sorzano CO; Förster F
    Structure; 2014 Oct; 22(10):1528-37. PubMed ID: 25242455
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Fine-grained alignment of cryo-electron subtomograms based on MPI parallel optimization.
    Lü Y; Zeng X; Zhao X; Li S; Li H; Gao X; Xu M
    BMC Bioinformatics; 2019 Aug; 20(1):443. PubMed ID: 31455212
    [TBL] [Abstract][Full Text] [Related]  

  • 4. TomoMiner and TomoMinerCloud: A Software Platform for Large-Scale Subtomogram Structural Analysis.
    Frazier Z; Xu M; Alber F
    Structure; 2017 Jun; 25(6):951-961.e2. PubMed ID: 28552576
    [TBL] [Abstract][Full Text] [Related]  

  • 5. High-throughput subtomogram alignment and classification by Fourier space constrained fast volumetric matching.
    Xu M; Beck M; Alber F
    J Struct Biol; 2012 May; 178(2):152-64. PubMed ID: 22420977
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Subtomogram analysis using the Volta phase plate.
    Khoshouei M; Pfeffer S; Baumeister W; Förster F; Danev R
    J Struct Biol; 2017 Feb; 197(2):94-101. PubMed ID: 27235783
    [TBL] [Abstract][Full Text] [Related]  

  • 7. An integration of fast alignment and maximum-likelihood methods for electron subtomogram averaging and classification.
    Zhao Y; Zeng X; Guo Q; Xu M
    Bioinformatics; 2018 Jul; 34(13):i227-i236. PubMed ID: 29949977
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Cryo-Electron Tomography and Subtomogram Averaging.
    Wan W; Briggs JA
    Methods Enzymol; 2016; 579():329-67. PubMed ID: 27572733
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Automated target segmentation and real space fast alignment methods for high-throughput classification and averaging of crowded cryo-electron subtomograms.
    Xu M; Alber F
    Bioinformatics; 2013 Jul; 29(13):i274-82. PubMed ID: 23812994
    [TBL] [Abstract][Full Text] [Related]  

  • 10. PyTom: a python-based toolbox for localization of macromolecules in cryo-electron tomograms and subtomogram analysis.
    Hrabe T; Chen Y; Pfeffer S; Cuellar LK; Mangold AV; Förster F
    J Struct Biol; 2012 May; 178(2):177-88. PubMed ID: 22193517
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Cryo-shift: reducing domain shift in cryo-electron subtomograms with unsupervised domain adaptation and randomization.
    Bandyopadhyay H; Deng Z; Ding L; Liu S; Uddin MR; Zeng X; Behpour S; Xu M
    Bioinformatics; 2022 Jan; 38(4):977-984. PubMed ID: 34897387
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Current data processing strategies for cryo-electron tomography and subtomogram averaging.
    Pyle E; Zanetti G
    Biochem J; 2021 May; 478(10):1827-1845. PubMed ID: 34003255
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Subtomogram alignment by adaptive Fourier coefficient thresholding.
    Amat F; Comolli LR; Moussavi F; Smit J; Downing KH; Horowitz M
    J Struct Biol; 2010 Sep; 171(3):332-44. PubMed ID: 20621702
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Simulating cryo electron tomograms of crowded cell cytoplasm for assessment of automated particle picking.
    Pei L; Xu M; Frazier Z; Alber F
    BMC Bioinformatics; 2016 Oct; 17(1):405. PubMed ID: 27716029
    [TBL] [Abstract][Full Text] [Related]  

  • 15. High precision alignment of cryo-electron subtomograms through gradient-based parallel optimization.
    Xu M; Alber F
    BMC Syst Biol; 2012; 6 Suppl 1(Suppl 1):S18. PubMed ID: 23046491
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Fast and accurate reference-free alignment of subtomograms.
    Chen Y; Pfeffer S; Hrabe T; Schuller JM; Förster F
    J Struct Biol; 2013 Jun; 182(3):235-45. PubMed ID: 23523719
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Quantifying resolution limiting factors in subtomogram averaged cryo-electron tomography using simulations.
    Voortman LM; Vulović M; Maletta M; Voigt A; Franken EM; Simonetti A; Peters PJ; van Vliet LJ; Rieger B
    J Struct Biol; 2014 Aug; 187(2):103-111. PubMed ID: 24998892
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A simple and fast approach for missing-wedge invariant classification of subtomograms extracted from filamentous structures.
    Obbineni JM; Yamamoto R; Ishikawa T
    J Struct Biol; 2017 Feb; 197(2):145-154. PubMed ID: 27520596
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A feature-guided, focused 3D signal permutation method for subtomogram averaging.
    Peters JJ; Leitz J; Guo Q; Beck F; Baumeister W; Brunger AT
    J Struct Biol; 2022 Jun; 214(2):107851. PubMed ID: 35346811
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Subtomogram averaging from cryo-electron tomograms.
    Leigh KE; Navarro PP; Scaramuzza S; Chen W; Zhang Y; Castaño-Díez D; Kudryashev M
    Methods Cell Biol; 2019; 152():217-259. PubMed ID: 31326022
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.