BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

199 related articles for article (PubMed ID: 33758846)

  • 1. Tiled-ClickSeq for targeted sequencing of complete coronavirus genomes with simultaneous capture of RNA recombination and minority variants.
    Jaworski E; Langsjoen RM; Mitchell B; Judy B; Newman P; Plante JA; Plante KS; Miller AL; Zhou Y; Swetnam D; Sotcheff S; Morris V; Saada N; Machado R; McConnell A; Widen S; Thompson J; Dong J; Ren P; Pyles RB; Ksiazek T; Menachery VD; Weaver SC; Routh A
    bioRxiv; 2021 Sep; ():. PubMed ID: 33758846
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Tiled-ClickSeq for targeted sequencing of complete coronavirus genomes with simultaneous capture of RNA recombination and minority variants.
    Jaworski E; Langsjoen RM; Mitchell B; Judy B; Newman P; Plante JA; Plante KS; Miller AL; Zhou Y; Swetnam D; Sotcheff S; Morris V; Saada N; Machado RR; McConnell A; Widen SG; Thompson J; Dong J; Ren P; Pyles RB; Ksiazek TG; Menachery VD; Weaver SC; Routh AL
    Elife; 2021 Sep; 10():. PubMed ID: 34581669
    [TBL] [Abstract][Full Text] [Related]  

  • 3. ClickSeq: Fragmentation-Free Next-Generation Sequencing via Click Ligation of Adaptors to Stochastically Terminated 3'-Azido cDNAs.
    Routh A; Head SR; Ordoukhanian P; Johnson JE
    J Mol Biol; 2015 Aug; 427(16):2610-6. PubMed ID: 26116762
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Universal whole-genome Oxford nanopore sequencing of SARS-CoV-2 using tiled amplicons.
    Kalendar R; Kairov U; Karabayev D; Aitkulova A; Tynyshtykbayeva N; Daniyarov A; Otarbay Z; Rakhimova S; Akilzhanova A; Sarbassov D
    Sci Rep; 2023 Jun; 13(1):10334. PubMed ID: 37365249
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Genomic surveillance of SARS-CoV-2 using long-range PCR primers.
    Kandel S; Hartzell SL; Ingold AK; Turner GA; Kennedy JL; Ussery DW
    Front Microbiol; 2024; 15():1272972. PubMed ID: 38440140
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Genomic Surveillance of SARS-CoV-2 Using Long-Range PCR Primers.
    Kandel S; Hartzell SL; Ingold AK; Turner GA; Kennedy JL; Ussery DW
    bioRxiv; 2023 Jul; ():. PubMed ID: 37502853
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Unique Molecular Identifiers and Multiplexing Amplicons Maximize the Utility of Deep Sequencing To Critically Assess Population Diversity in RNA Viruses.
    Zhou S; Hill CS; Spielvogel E; Clark MU; Hudgens MG; Swanstrom R
    ACS Infect Dis; 2022 Dec; 8(12):2505-2514. PubMed ID: 36326446
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Amplicon-Based, Next-Generation Sequencing Approaches to Characterize Single Nucleotide Polymorphisms of
    Taylor MK; Williams EP; Wongsurawat T; Jenjaroenpun P; Nookaew I; Jonsson CB
    Front Cell Infect Microbiol; 2020; 10():565591. PubMed ID: 33163416
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Rapid and inexpensive whole-genome sequencing of SARS-CoV-2 using 1200 bp tiled amplicons and Oxford Nanopore Rapid Barcoding.
    Freed NE; Vlková M; Faisal MB; Silander OK
    Biol Methods Protoc; 2020; 5(1):bpaa014. PubMed ID: 33029559
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Ultrasensitive single-genome sequencing: accurate, targeted, next generation sequencing of HIV-1 RNA.
    Boltz VF; Rausch J; Shao W; Hattori J; Luke B; Maldarelli F; Mellors JW; Kearney MF; Coffin JM
    Retrovirology; 2016 Dec; 13(1):87. PubMed ID: 27998286
    [TBL] [Abstract][Full Text] [Related]  

  • 11. A short plus long-amplicon based sequencing approach improves genomic coverage and variant detection in the SARS-CoV-2 genome.
    Arana C; Liang C; Brock M; Zhang B; Zhou J; Chen L; Cantarel B; SoRelle J; Hooper LV; Raj P
    PLoS One; 2022; 17(1):e0261014. PubMed ID: 35025877
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Parallel ClickSeq and Nanopore sequencing elucidates the rapid evolution of defective-interfering RNAs in Flock House virus.
    Jaworski E; Routh A
    PLoS Pathog; 2017 May; 13(5):e1006365. PubMed ID: 28475646
    [TBL] [Abstract][Full Text] [Related]  

  • 13. ClickSeq: Replacing Fragmentation and Enzymatic Ligation with Click-Chemistry to Prevent Sequence Chimeras.
    Jaworski E; Routh A
    Methods Mol Biol; 2018; 1712():71-85. PubMed ID: 29224069
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Amplicon-Based Detection and Sequencing of SARS-CoV-2 in Nasopharyngeal Swabs from Patients With COVID-19 and Identification of Deletions in the Viral Genome That Encode Proteins Involved in Interferon Antagonism.
    Moore SC; Penrice-Randal R; Alruwaili M; Randle N; Armstrong S; Hartley C; Haldenby S; Dong X; Alrezaihi A; Almsaud M; Bentley E; Clark J; García-Dorival I; Gilmore P; Han X; Jones B; Luu L; Sharma P; Shawli G; Sun Y; Zhao Q; Pullan ST; Carter DP; Bewley K; Dunning J; Zhou EM; Solomon T; Beadsworth M; Cruise J; Crook DW; Matthews DA; Davidson AD; Mahmood Z; Aljabr W; Druce J; Vipond R; Ng L; Renia L; Openshaw PJM; Baillie JK; Carroll MW; Stewart J; Darby A; Semple M; Turtle L; Hiscox JA
    Viruses; 2020 Oct; 12(10):. PubMed ID: 33066701
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Olivar: automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens.
    Wang MX; Lou EG; Sapoval N; Kim E; Kalvapalle P; Kille B; Elworth RAL; Liu Y; Fu Y; Stadler LB; Treangen TJ
    bioRxiv; 2023 Sep; ():. PubMed ID: 36824759
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Targeted Whole Genome Sequencing (TWG-Seq) of Cucumber Green Mottle Mosaic Virus Using Tiled Amplicon Multiplex PCR and Nanopore Sequencing.
    Mackie J; Kinoti WM; Chahal SI; Lovelock DA; Campbell PR; Tran-Nguyen LTT; Rodoni BC; Constable FE
    Plants (Basel); 2022 Oct; 11(20):. PubMed ID: 36297740
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Poly(A)-ClickSeq: click-chemistry for next-generation 3΄-end sequencing without RNA enrichment or fragmentation.
    Routh A; Ji P; Jaworski E; Xia Z; Li W; Wagner EJ
    Nucleic Acids Res; 2017 Jul; 45(12):e112. PubMed ID: 28449108
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Assessment of two-pool multiplex long-amplicon nanopore sequencing of SARS-CoV-2.
    Liu H; Li J; Lin Y; Bo X; Song H; Li K; Li P; Ni M
    J Med Virol; 2022 Jan; 94(1):327-334. PubMed ID: 34524690
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A Universal Next-Generation Sequencing Protocol To Generate Noninfectious Barcoded cDNA Libraries from High-Containment RNA Viruses.
    Moser LA; Ramirez-Carvajal L; Puri V; Pauszek SJ; Matthews K; Dilley KA; Mullan C; McGraw J; Khayat M; Beeri K; Yee A; Dugan V; Heise MT; Frieman MB; Rodriguez LL; Bernard KA; Wentworth DE; Stockwell TB; Shabman RS
    mSystems; 2016; 1(3):. PubMed ID: 27822536
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A robust and cost-effective approach to sequence and analyze complete genomes of small RNA viruses.
    Dimitrov KM; Sharma P; Volkening JD; Goraichuk IV; Wajid A; Rehmani SF; Basharat A; Shittu I; Joannis TM; Miller PJ; Afonso CL
    Virol J; 2017 Apr; 14(1):72. PubMed ID: 28388925
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.