199 related articles for article (PubMed ID: 33758846)
21. Amplification of overlapping DNA amplicons in a single-tube multiplex PCR for targeted next-generation sequencing of BRCA1 and BRCA2.
Schenk D; Song G; Ke Y; Wang Z
PLoS One; 2017; 12(7):e0181062. PubMed ID: 28704513
[TBL] [Abstract][Full Text] [Related]
22. Analysis of the ARTIC V4 and V4.1 SARS-CoV-2 primers and their impact on the detection of Omicron BA.1 and BA.2 lineage-defining mutations.
Ulhuq FR; Barge M; Falconer K; Wild J; Fernandes G; Gallagher A; McGinley S; Sugadol A; Tariq M; Maloney D; Kenicer J; Dewar R; Templeton K; McHugh MP
Microb Genom; 2023 Apr; 9(4):. PubMed ID: 37083576
[TBL] [Abstract][Full Text] [Related]
23. A comparison of five Illumina, Ion Torrent, and nanopore sequencing technology-based approaches for whole genome sequencing of SARS-CoV-2.
Carbo EC; Mourik K; Boers SA; Munnink BO; Nieuwenhuijse D; Jonges M; Welkers MRA; Matamoros S; van Harinxma Thoe Slooten J; Kraakman MEM; Karelioti E; van der Meer D; Veldkamp KE; Kroes ACM; Sidorov I; de Vries JJC
Eur J Clin Microbiol Infect Dis; 2023 Jun; 42(6):701-713. PubMed ID: 37017810
[TBL] [Abstract][Full Text] [Related]
24. In silico evaluation of the impact of Omicron variant of concern sublineage BA.4 and BA.5 on the sensitivity of RT-qPCR assays for SARS-CoV-2 detection using whole genome sequencing.
Sharma D; Notarte KI; Fernandez RA; Lippi G; Gromiha MM; Henry BM
J Med Virol; 2023 Jan; 95(1):e28241. PubMed ID: 36263448
[TBL] [Abstract][Full Text] [Related]
25. Rapid High-Throughput Whole-Genome Sequencing of SARS-CoV-2 by Using One-Step Reverse Transcription-PCR Amplification with an Integrated Microfluidic System and Next-Generation Sequencing.
Li T; Chung HK; Pireku PK; Beitzel BF; Sanborn MA; Tang CY; Hammer RD; Ritter D; Wan XF; Maljkovic Berry I; Hang J
J Clin Microbiol; 2021 Apr; 59(5):. PubMed ID: 33653700
[TBL] [Abstract][Full Text] [Related]
26. Rapid whole genome sequencing methods for RNA viruses.
Misu M; Yoshikawa T; Sugimoto S; Takamatsu Y; Kurosu T; Ouji Y; Yoshikawa M; Shimojima M; Ebihara H; Saijo M
Front Microbiol; 2023; 14():1137086. PubMed ID: 36910229
[TBL] [Abstract][Full Text] [Related]
27. Evaluation of NGS-based approaches for SARS-CoV-2 whole genome characterisation.
Charre C; Ginevra C; Sabatier M; Regue H; Destras G; Brun S; Burfin G; Scholtes C; Morfin F; Valette M; Lina B; Bal A; Josset L
Virus Evol; 2020 Jul; 6(2):veaa075. PubMed ID: 33318859
[TBL] [Abstract][Full Text] [Related]
28. Primer ID Validates Template Sampling Depth and Greatly Reduces the Error Rate of Next-Generation Sequencing of HIV-1 Genomic RNA Populations.
Zhou S; Jones C; Mieczkowski P; Swanstrom R
J Virol; 2015 Aug; 89(16):8540-55. PubMed ID: 26041299
[TBL] [Abstract][Full Text] [Related]
29. Simplified Point-of-Care Full SARS-CoV-2 Genome Sequencing Using Nanopore Technology.
Pembaur A; Sallard E; Weil PP; Ortelt J; Ahmad-Nejad P; Postberg J
Microorganisms; 2021 Dec; 9(12):. PubMed ID: 34946199
[TBL] [Abstract][Full Text] [Related]
30. Targeted Hybridization Capture of SARS-CoV-2 and Metagenomics Enables Genetic Variant Discovery and Nasal Microbiome Insights.
Nagy-Szakal D; Couto-Rodriguez M; Wells HL; Barrows JE; Debieu M; Butcher K; Chen S; Berki A; Hager C; Boorstein RJ; Taylor MK; Jonsson CB; Mason CE; O'Hara NB
Microbiol Spectr; 2021 Oct; 9(2):e0019721. PubMed ID: 34468193
[TBL] [Abstract][Full Text] [Related]
31. Genetic Surveillance of Five SARS-CoV-2 Clinical Samples in Henan Province Using Nanopore Sequencing.
Wang Y; Chen D; Zhu C; Zhao Z; Gao S; Gou J; Guo Y; Kong X
Front Immunol; 2022; 13():814806. PubMed ID: 35444655
[TBL] [Abstract][Full Text] [Related]
32. A Serotype-Specific and Multiplex PCR Method for Whole-Genome Sequencing of Dengue Virus Directly from Clinical Samples.
Su W; Jiang L; Lu W; Xie H; Cao Y; Di B; Li Y; Nie K; Wang H; Zhang Z; Xu S
Microbiol Spectr; 2022 Oct; 10(5):e0121022. PubMed ID: 36094197
[TBL] [Abstract][Full Text] [Related]
33. A Comparison of Whole Genome Sequencing of SARS-CoV-2 Using Amplicon-Based Sequencing, Random Hexamers, and Bait Capture.
Nasir JA; Kozak RA; Aftanas P; Raphenya AR; Smith KM; Maguire F; Maan H; Alruwaili M; Banerjee A; Mbareche H; Alcock BP; Knox NC; Mossman K; Wang B; Hiscox JA; McArthur AG; Mubareka S
Viruses; 2020 Aug; 12(8):. PubMed ID: 32824272
[TBL] [Abstract][Full Text] [Related]
34. Mitigating the effects of reference sequence bias in single-multiplex massively parallel sequencing of the mitochondrial DNA control region.
Huszar TI; Wetton JH; Jobling MA
Forensic Sci Int Genet; 2019 May; 40():9-17. PubMed ID: 30682697
[TBL] [Abstract][Full Text] [Related]
35. Identification of SARS-CoV-2 Variants of Concern Using Amplicon Next-Generation Sequencing.
Nasereddin A; Golan Berman H; Wolf DG; Oiknine-Djian E; Adar S
Microbiol Spectr; 2022 Aug; 10(4):e0073622. PubMed ID: 35758686
[TBL] [Abstract][Full Text] [Related]
36. FnCas9-based CRISPR diagnostic for rapid and accurate detection of major SARS-CoV-2 variants on a paper strip.
Kumar M; Gulati S; Ansari AH; Phutela R; Acharya S; Azhar M; Murthy J; Kathpalia P; Kanakan A; Maurya R; Vasudevan JS; S A; Pandey R; Maiti S; Chakraborty D
Elife; 2021 Jun; 10():. PubMed ID: 34106048
[TBL] [Abstract][Full Text] [Related]
37. Single-Amplicon Multiplex Real-Time Reverse Transcription-PCR with Tiled Probes To Detect SARS-CoV-2
Babiker A; Immergluck K; Stampfer SD; Rao A; Bassit L; Su M; Nguyen V; Stittleburg V; Ingersoll JM; Bradley HL; Mavigner M; Schoof N; Kraft CS; Chahroudi A; Schinazi RF; Martin GS; Piantadosi A; Lam WA; Waggoner JJ
J Clin Microbiol; 2021 Nov; 59(12):e0144621. PubMed ID: 34432488
[TBL] [Abstract][Full Text] [Related]
38. MPD: multiplex primer design for next-generation targeted sequencing.
Wingo TS; Kotlar A; Cutler DJ
BMC Bioinformatics; 2017 Jan; 18(1):14. PubMed ID: 28056760
[TBL] [Abstract][Full Text] [Related]
39. Analysis of SARS-CoV-2 known and novel subgenomic mRNAs in cell culture, animal model, and clinical samples using LeTRS, a bioinformatic tool to identify unique sequence identifiers.
Dong X; Penrice-Randal R; Goldswain H; Prince T; Randle N; Donovan-Banfield I; Salguero FJ; Tree J; Vamos E; Nelson C; Clark J; Ryan Y; Stewart JP; Semple MG; Baillie JK; Openshaw PJM; Turtle L; Matthews DA; Carroll MW; Darby AC; Hiscox JA
Gigascience; 2022 May; 11():. PubMed ID: 35639883
[TBL] [Abstract][Full Text] [Related]
40. Rapid and sensitive amplicon-based genome sequencing of SARS-CoV-2.
Park C; Kim KW; Park D; Hassan ZU; Park EC; Lee CS; Rahman MT; Yi H; Kim S
Front Microbiol; 2022; 13():876085. PubMed ID: 36060750
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
