BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

162 related articles for article (PubMed ID: 33758926)

  • 1. SBGN Bricks Ontology as a tool to describe recurring concepts in molecular networks.
    Rougny A; Touré V; Albanese J; Waltemath D; Shirshov D; Sorokin A; Bader GD; Blinov ML; Mazein A
    Brief Bioinform; 2021 Sep; 22(5):. PubMed ID: 33758926
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Creating interactive, web-based and data-enriched maps with the Systems Biology Graphical Notation.
    Junker A; Rohn H; Czauderna T; Klukas C; Hartmann A; Schreiber F
    Nat Protoc; 2012 Mar; 7(3):579-93. PubMed ID: 22383037
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Editing, validating and translating of SBGN maps.
    Czauderna T; Klukas C; Schreiber F
    Bioinformatics; 2010 Sep; 26(18):2340-1. PubMed ID: 20628075
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Translation of SBGN maps: Process Description to Activity Flow.
    Vogt T; Czauderna T; Schreiber F
    BMC Syst Biol; 2013 Oct; 7():115. PubMed ID: 24176088
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Systems Biology Graphical Notation: Activity Flow language Level 1 Version 1.2.
    Mi H; Schreiber F; Moodie S; Czauderna T; Demir E; Haw R; Luna A; Le Novère N; Sorokin A; Villéger A
    J Integr Bioinform; 2015 Sep; 12(2):265. PubMed ID: 26528563
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Systems biology graphical notation markup language (SBGNML) version 0.3.
    Bergmann FT; Czauderna T; Dogrusoz U; Rougny A; Dräger A; Touré V; Mazein A; Blinov ML; Luna A
    J Integr Bioinform; 2020 Jun; 17(2-3):. PubMed ID: 32568733
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Design considerations for representing systems biology information with the Systems Biology Graphical Notation.
    Schreiber F; Czauderna T
    J Integr Bioinform; 2022 Jul; 19(2):. PubMed ID: 35786424
    [TBL] [Abstract][Full Text] [Related]  

  • 8. CySBGN: a Cytoscape plug-in to integrate SBGN maps.
    Gonçalves E; van Iersel M; Saez-Rodriguez J
    BMC Bioinformatics; 2013 Jan; 14():17. PubMed ID: 23324051
    [TBL] [Abstract][Full Text] [Related]  

  • 9. GraphML-SBGN bidirectional converter for metabolic networks.
    Balaur I; Roy L; Touré V; Mazein A; Auffray C
    J Integr Bioinform; 2022 Dec; 19(4):. PubMed ID: 36563404
    [TBL] [Abstract][Full Text] [Related]  

  • 10. sbgntikz-a TikZ library to draw SBGN maps.
    Rougny A
    Bioinformatics; 2019 Nov; 35(21):4499-4500. PubMed ID: 31070720
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Qualitative dynamics semantics for SBGN process description.
    Rougny A; Froidevaux C; Calzone L; Paulevé L
    BMC Syst Biol; 2016 Jun; 10(1):42. PubMed ID: 27306057
    [TBL] [Abstract][Full Text] [Related]  

  • 12. StonPy: a tool to parse and query collections of SBGN maps in a graph database.
    Rougny A; Balaur I; Luna A; Mazein A
    Bioinformatics; 2023 Mar; 39(3):. PubMed ID: 36897014
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Systems Biology Graphical Notation: Entity Relationship language Level 1 Version 2.
    Sorokin A; Le Novère N; Luna A; Czauderna T; Demir E; Haw R; Mi H; Moodie S; Schreiber F; Villéger A
    J Integr Bioinform; 2015 Sep; 12(2):264. PubMed ID: 26528562
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Biochemical modeling with Systems Biology Graphical Notation.
    Jansson A; Jirstrand M
    Drug Discov Today; 2010 May; 15(9-10):365-70. PubMed ID: 20211756
    [TBL] [Abstract][Full Text] [Related]  

  • 15. STON: exploring biological pathways using the SBGN standard and graph databases.
    Touré V; Mazein A; Waltemath D; Balaur I; Saqi M; Henkel R; Pellet J; Auffray C
    BMC Bioinformatics; 2016 Dec; 17(1):494. PubMed ID: 27919219
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Systems Biology Graphical Notation: Process Description language Level 1 Version 1.3.
    Moodie S; Le Novère N; Demir E; Mi H; Villéger A
    J Integr Bioinform; 2015 Sep; 12(2):263. PubMed ID: 26528561
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0.
    Rougny A; Touré V; Moodie S; Balaur I; Czauderna T; Borlinghaus H; Dogrusoz U; Mazein A; Dräger A; Blinov ML; Villéger A; Haw R; Demir E; Mi H; Sorokin A; Schreiber F; Luna A
    J Integr Bioinform; 2019 Jun; 16(2):. PubMed ID: 31199769
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Conversion of KEGG metabolic pathways to SBGN maps including automatic layout.
    Czauderna T; Wybrow M; Marriott K; Schreiber F
    BMC Bioinformatics; 2013 Aug; 14():250. PubMed ID: 23953132
    [TBL] [Abstract][Full Text] [Related]  

  • 19. The Systems Biology Graphical Notation.
    Le Novère N; Hucka M; Mi H; Moodie S; Schreiber F; Sorokin A; Demir E; Wegner K; Aladjem MI; Wimalaratne SM; Bergman FT; Gauges R; Ghazal P; Kawaji H; Li L; Matsuoka Y; Villéger A; Boyd SE; Calzone L; Courtot M; Dogrusoz U; Freeman TC; Funahashi A; Ghosh S; Jouraku A; Kim S; Kolpakov F; Luna A; Sahle S; Schmidt E; Watterson S; Wu G; Goryanin I; Kell DB; Sander C; Sauro H; Snoep JL; Kohn K; Kitano H
    Nat Biotechnol; 2009 Aug; 27(8):735-41. PubMed ID: 19668183
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Software support for SBGN maps: SBGN-ML and LibSBGN.
    van Iersel MP; Villéger AC; Czauderna T; Boyd SE; Bergmann FT; Luna A; Demir E; Sorokin A; Dogrusoz U; Matsuoka Y; Funahashi A; Aladjem MI; Mi H; Moodie SL; Kitano H; Le Novère N; Schreiber F
    Bioinformatics; 2012 Aug; 28(15):2016-21. PubMed ID: 22581176
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.