These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

126 related articles for article (PubMed ID: 33760063)

  • 1. muCNV: Genotyping Structural Variants for Population-level Sequencing.
    Jun G; Sedlazeck F; Zhu Q; English A; Metcalf G; Kang HM; ; Lee C; Gibbs R; Boerwinkle E
    Bioinformatics; 2021 Aug; 37(14):2055–2057. PubMed ID: 33760063
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Discovery and genotyping of novel sequence insertions in many sequenced individuals.
    Kavak P; Lin YY; Numanagic I; Asghari H; Güngör T; Alkan C; Hach F
    Bioinformatics; 2017 Jul; 33(14):i161-i169. PubMed ID: 28881988
    [TBL] [Abstract][Full Text] [Related]  

  • 3. GGTyper: genotyping complex structural variants using short-read sequencing data.
    Mirus T; Lohmayer R; Döhring C; Halldórsson BV; Kehr B
    Bioinformatics; 2024 Sep; 40(Suppl 2):ii11-ii19. PubMed ID: 39230689
    [TBL] [Abstract][Full Text] [Related]  

  • 4. SNP genotyping and parameter estimation in polyploids using low-coverage sequencing data.
    Blischak PD; Kubatko LS; Wolfe AD
    Bioinformatics; 2018 Feb; 34(3):407-415. PubMed ID: 29028881
    [TBL] [Abstract][Full Text] [Related]  

  • 5. CAPG: comprehensive allopolyploid genotyper.
    Kulkarni R; Zhang Y; Cannon SB; Dorman KS
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36367243
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Seq2Sat and SatAnalyzer toolkit: Towards comprehensive microsatellite genotyping from sequencing data.
    Liu P; Wilson P; Redquest B; Keobouasone S; Manseau M
    Mol Ecol Resour; 2024 Apr; 24(3):e13929. PubMed ID: 38289068
    [TBL] [Abstract][Full Text] [Related]  

  • 7. A complete pipeline enables haplotyping and phasing macrohaplotype in long sequencing reads for polyploidy samples and a multi-source DNA mixture.
    Wang X; Muenzler M; King J; Liu M; Li H; Budowle B; Ge J
    Electrophoresis; 2024 May; 45(9-10):877-884. PubMed ID: 38196015
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Low-depth genotyping-by-sequencing (GBS) in a bovine population: strategies to maximize the selection of high quality genotypes and the accuracy of imputation.
    Brouard JS; Boyle B; Ibeagha-Awemu EM; Bissonnette N
    BMC Genet; 2017 Apr; 18(1):32. PubMed ID: 28381212
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Simple, rapid and accurate genotyping-by-sequencing from aligned whole genomes with ArrayMaker.
    Willet CE; Haase B; Charleston MA; Wade CM
    Bioinformatics; 2015 Feb; 31(4):599-601. PubMed ID: 25336502
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Leveraging reads that span multiple single nucleotide polymorphisms for haplotype inference from sequencing data.
    Yang WY; Hormozdiari F; Wang Z; He D; Pasaniuc B; Eskin E
    Bioinformatics; 2013 Sep; 29(18):2245-52. PubMed ID: 23825370
    [TBL] [Abstract][Full Text] [Related]  

  • 11. UpSetR: an R package for the visualization of intersecting sets and their properties.
    Conway JR; Lex A; Gehlenborg N
    Bioinformatics; 2017 Sep; 33(18):2938-2940. PubMed ID: 28645171
    [TBL] [Abstract][Full Text] [Related]  

  • 12. VIPER: a web application for rapid expert review of variant calls.
    Wöste M; Dugas M
    Bioinformatics; 2018 Jun; 34(11):1928-1929. PubMed ID: 29346510
    [TBL] [Abstract][Full Text] [Related]  

  • 13. SV2: accurate structural variation genotyping and de novo mutation detection from whole genomes.
    Antaki D; Brandler WM; Sebat J
    Bioinformatics; 2018 May; 34(10):1774-1777. PubMed ID: 29300834
    [TBL] [Abstract][Full Text] [Related]  

  • 14. SVJedi: genotyping structural variations with long reads.
    Lecompte L; Peterlongo P; Lavenier D; Lemaitre C
    Bioinformatics; 2020 Nov; 36(17):4568-4575. PubMed ID: 32437523
    [TBL] [Abstract][Full Text] [Related]  

  • 15. BFC: correcting Illumina sequencing errors.
    Li H
    Bioinformatics; 2015 Sep; 31(17):2885-7. PubMed ID: 25953801
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Nebula: ultra-efficient mapping-free structural variant genotyper.
    Khorsand P; Hormozdiari F
    Nucleic Acids Res; 2021 May; 49(8):e47. PubMed ID: 33503255
    [TBL] [Abstract][Full Text] [Related]  

  • 17. GTC: how to maintain huge genotype collections in a compressed form.
    Danek A; Deorowicz S
    Bioinformatics; 2018 Jun; 34(11):1834-1840. PubMed ID: 29351600
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Library Construction for High-Throughput Mobile Element Identification and Genotyping.
    Ha H; Wang N; Xing J
    Methods Mol Biol; 2017; 1589():1-15. PubMed ID: 26025622
    [TBL] [Abstract][Full Text] [Related]  

  • 19. FlashPCA2: principal component analysis of Biobank-scale genotype datasets.
    Abraham G; Qiu Y; Inouye M
    Bioinformatics; 2017 Sep; 33(17):2776-2778. PubMed ID: 28475694
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Skim-Based Genotyping by Sequencing Using a Double Haploid Population to Call SNPs, Infer Gene Conversions, and Improve Genome Assemblies.
    Bayer PE
    Methods Mol Biol; 2016; 1374():285-92. PubMed ID: 26519413
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.