These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

165 related articles for article (PubMed ID: 33764990)

  • 21. Improved prediction of antibody VL-VH orientation.
    Marze NA; Lyskov S; Gray JJ
    Protein Eng Des Sel; 2016 Oct; 29(10):409-418. PubMed ID: 27276984
    [TBL] [Abstract][Full Text] [Related]  

  • 22. ABlooper: fast accurate antibody CDR loop structure prediction with accuracy estimation.
    Abanades B; Georges G; Bujotzek A; Deane CM
    Bioinformatics; 2022 Mar; 38(7):1877-1880. PubMed ID: 35099535
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Ab initio structure prediction of the antibody hypervariable H3 loop.
    Zhu K; Day T
    Proteins; 2013 Jun; 81(6):1081-9. PubMed ID: 23255066
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Model Building of Antibody-Antigen Complex Structures Using GBSA Scores.
    Shimba N; Kamiya N; Nakamura H
    J Chem Inf Model; 2016 Oct; 56(10):2005-2012. PubMed ID: 27618247
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Geometric potentials from deep learning improve prediction of CDR H3 loop structures.
    Ruffolo JA; Guerra C; Mahajan SP; Sulam J; Gray JJ
    Bioinformatics; 2020 Jul; 36(Suppl_1):i268-i275. PubMed ID: 32657412
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Distance-Guided Forward and Backward Chain-Growth Monte Carlo Method for Conformational Sampling and Structural Prediction of Antibody CDR-H3 Loops.
    Tang K; Zhang J; Liang J
    J Chem Theory Comput; 2017 Jan; 13(1):380-388. PubMed ID: 27996262
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Automated Aufbau of antibody structures from given sequences using Macromoltek's SmrtMolAntibody.
    Berrondo M; Kaufmann S; Berrondo M
    Proteins; 2014 Aug; 82(8):1636-45. PubMed ID: 24777752
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Differential performance of RoseTTAFold in antibody modeling.
    Liang T; Jiang C; Yuan J; Othman Y; Xie XQ; Feng Z
    Brief Bioinform; 2022 Sep; 23(5):. PubMed ID: 35598325
    [TBL] [Abstract][Full Text] [Related]  

  • 29. CDR-H3 loop ensemble in solution - conformational selection upon antibody binding.
    Fernández-Quintero ML; Kraml J; Georges G; Liedl KR
    MAbs; 2019; 11(6):1077-1088. PubMed ID: 31148507
    [TBL] [Abstract][Full Text] [Related]  

  • 30. High-resolution modeling of antibody structures by a combination of bioinformatics, expert knowledge, and molecular simulations.
    Shirai H; Ikeda K; Yamashita K; Tsuchiya Y; Sarmiento J; Liang S; Morokata T; Mizuguchi K; Higo J; Standley DM; Nakamura H
    Proteins; 2014 Aug; 82(8):1624-35. PubMed ID: 24756852
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Towards the accurate modelling of antibody-antigen complexes from sequence using machine learning and information-driven docking.
    Giulini M; Schneider C; Cutting D; Desai N; Deane CM; Bonvin AMJJ
    Bioinformatics; 2024 Oct; 40(10):. PubMed ID: 39348157
    [TBL] [Abstract][Full Text] [Related]  

  • 32. High-accuracy modeling of antibody structures by a search for minimum-energy recombination of backbone fragments.
    Norn CH; Lapidoth G; Fleishman SJ
    Proteins; 2017 Jan; 85(1):30-38. PubMed ID: 27717001
    [TBL] [Abstract][Full Text] [Related]  

  • 33. ABodyBuilder: Automated antibody structure prediction with data-driven accuracy estimation.
    Leem J; Dunbar J; Georges G; Shi J; Deane CM
    MAbs; 2016 Oct; 8(7):1259-1268. PubMed ID: 27392298
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Systematic classification of CDR-L3 in antibodies: implications of the light chain subtypes and the VL-VH interface.
    Kuroda D; Shirai H; Kobori M; Nakamura H
    Proteins; 2009 Apr; 75(1):139-46. PubMed ID: 18798566
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Benchmarking TriadAb using targets from the second antibody modeling assessment.
    Lee FS; Anderson AG; Olafson BD
    Protein Eng Des Sel; 2023 Jan; 36():. PubMed ID: 37864287
    [TBL] [Abstract][Full Text] [Related]  

  • 36. TCRmodel: high resolution modeling of T cell receptors from sequence.
    Gowthaman R; Pierce BG
    Nucleic Acids Res; 2018 Jul; 46(W1):W396-W401. PubMed ID: 29790966
    [TBL] [Abstract][Full Text] [Related]  

  • 37. IsAb: a computational protocol for antibody design.
    Liang T; Chen H; Yuan J; Jiang C; Hao Y; Wang Y; Feng Z; Xie XQ
    Brief Bioinform; 2021 Sep; 22(5):. PubMed ID: 33876197
    [TBL] [Abstract][Full Text] [Related]  

  • 38. The H3 loop of antibodies shows unique structural characteristics.
    Regep C; Georges G; Shi J; Popovic B; Deane CM
    Proteins; 2017 Jul; 85(7):1311-1318. PubMed ID: 28342222
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Kotai Antibody Builder: automated high-resolution structural modeling of antibodies.
    Yamashita K; Ikeda K; Amada K; Liang S; Tsuchiya Y; Nakamura H; Shirai H; Standley DM
    Bioinformatics; 2014 Nov; 30(22):3279-80. PubMed ID: 25064566
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Antibody modeling assessment.
    Almagro JC; Beavers MP; Hernandez-Guzman F; Maier J; Shaulsky J; Butenhof K; Labute P; Thorsteinson N; Kelly K; Teplyakov A; Luo J; Sweet R; Gilliland GL
    Proteins; 2011 Nov; 79(11):3050-66. PubMed ID: 21935986
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 9.