245 related articles for article (PubMed ID: 33765284)
1. Genome-Wide Analysis of Actively Translated Open Reading Frames Using RiboTaper/ORFquant.
Harnett D; Meerdink E; Calviello L; Sydow D; Ohler U
Methods Mol Biol; 2021; 2252():331-346. PubMed ID: 33765284
[TBL] [Abstract][Full Text] [Related]
2. Detecting actively translated open reading frames in ribosome profiling data.
Calviello L; Mukherjee N; Wyler E; Zauber H; Hirsekorn A; Selbach M; Landthaler M; Obermayer B; Ohler U
Nat Methods; 2016 Feb; 13(2):165-70. PubMed ID: 26657557
[TBL] [Abstract][Full Text] [Related]
3. Comparison of software packages for detecting unannotated translated small open reading frames by Ribo-seq.
Tong G; Hah N; Martinez TF
Brief Bioinform; 2024 May; 25(4):. PubMed ID: 38842510
[TBL] [Abstract][Full Text] [Related]
4. De novo Identification of Actively Translated Open Reading Frames with Ribosome Profiling Data.
Zhu Y; Li F; Yang X; Xiao Z
J Vis Exp; 2022 Feb; (180):. PubMed ID: 35253791
[TBL] [Abstract][Full Text] [Related]
5. RPFdb v2.0: an updated database for genome-wide information of translated mRNA generated from ribosome profiling.
Wang H; Yang L; Wang Y; Chen L; Li H; Xie Z
Nucleic Acids Res; 2019 Jan; 47(D1):D230-D234. PubMed ID: 30335166
[TBL] [Abstract][Full Text] [Related]
6. Unsupervised Bayesian Prediction of RNA Translation from Ribosome Profiling Data.
Boileau E; Dieterich C
Methods Mol Biol; 2021; 2252():295-312. PubMed ID: 33765282
[TBL] [Abstract][Full Text] [Related]
7. RiboToolkit: an integrated platform for analysis and annotation of ribosome profiling data to decode mRNA translation at codon resolution.
Liu Q; Shvarts T; Sliz P; Gregory RI
Nucleic Acids Res; 2020 Jul; 48(W1):W218-W229. PubMed ID: 32427338
[TBL] [Abstract][Full Text] [Related]
8. RibORF: Identifying Genome-Wide Translated Open Reading Frames Using Ribosome Profiling.
Ji Z
Curr Protoc Mol Biol; 2018 Oct; 124(1):e67. PubMed ID: 30178897
[TBL] [Abstract][Full Text] [Related]
9. Ribosome elongating footprints denoised by wavelet transform comprehensively characterize dynamic cellular translation events.
Xu Z; Hu L; Shi B; Geng S; Xu L; Wang D; Lu ZJ
Nucleic Acids Res; 2018 Oct; 46(18):e109. PubMed ID: 29945224
[TBL] [Abstract][Full Text] [Related]
10. Quantification of translation uncovers the functions of the alternative transcriptome.
Calviello L; Hirsekorn A; Ohler U
Nat Struct Mol Biol; 2020 Aug; 27(8):717-725. PubMed ID: 32601440
[TBL] [Abstract][Full Text] [Related]
11. Observation of dually decoded regions of the human genome using ribosome profiling data.
Michel AM; Choudhury KR; Firth AE; Ingolia NT; Atkins JF; Baranov PV
Genome Res; 2012 Nov; 22(11):2219-29. PubMed ID: 22593554
[TBL] [Abstract][Full Text] [Related]
12. Accurate detection of short and long active ORFs using Ribo-seq data.
Choudhary S; Li W; D Smith A
Bioinformatics; 2020 Apr; 36(7):2053-2059. PubMed ID: 31750902
[TBL] [Abstract][Full Text] [Related]
13. smORFer: a modular algorithm to detect small ORFs in prokaryotes.
Bartholomäus A; Kolte B; Mustafayeva A; Goebel I; Fuchs S; Benndorf D; Engelmann S; Ignatova Z
Nucleic Acids Res; 2021 Sep; 49(15):e89. PubMed ID: 34125903
[TBL] [Abstract][Full Text] [Related]
14. uORF-seqr: A Machine Learning-Based Approach to the Identification of Upstream Open Reading Frames in Yeast.
Spealman P; Naik A; McManus J
Methods Mol Biol; 2021; 2252():313-329. PubMed ID: 33765283
[TBL] [Abstract][Full Text] [Related]
15. Ribosomal profiling adds new coding sequences to the proteome.
Mumtaz MA; Couso JP
Biochem Soc Trans; 2015 Dec; 43(6):1271-6. PubMed ID: 26614672
[TBL] [Abstract][Full Text] [Related]
16. Assessing Ribosome Distribution Along Transcripts with Polarity Scores and Regression Slope Estimates.
Vorontsov IE; Egorov AA; Anisimova AS; Eliseeva IA; Makeev VJ; Gladyshev VN; Dmitriev SE; Kulakovskiy IV
Methods Mol Biol; 2021; 2252():269-294. PubMed ID: 33765281
[TBL] [Abstract][Full Text] [Related]
17. SPECtre: a spectral coherence--based classifier of actively translated transcripts from ribosome profiling sequence data.
Chun SY; Rodriguez CM; Todd PK; Mills RE
BMC Bioinformatics; 2016 Nov; 17(1):482. PubMed ID: 27884106
[TBL] [Abstract][Full Text] [Related]
18. PROTEOFORMER: deep proteome coverage through ribosome profiling and MS integration.
Crappé J; Ndah E; Koch A; Steyaert S; Gawron D; De Keulenaer S; De Meester E; De Meyer T; Van Criekinge W; Van Damme P; Menschaert G
Nucleic Acids Res; 2015 Mar; 43(5):e29. PubMed ID: 25510491
[TBL] [Abstract][Full Text] [Related]
19. Bayesian prediction of RNA translation from ribosome profiling.
Malone B; Atanassov I; Aeschimann F; Li X; Großhans H; Dieterich C
Nucleic Acids Res; 2017 Apr; 45(6):2960-2972. PubMed ID: 28126919
[TBL] [Abstract][Full Text] [Related]
20. Exploring Ribosome Positioning on Translating Transcripts with Ribosome Profiling.
Spealman P; Wang H; May G; Kingsford C; McManus CJ
Methods Mol Biol; 2016; 1358():71-97. PubMed ID: 26463378
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]