These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

104 related articles for article (PubMed ID: 33774165)

  • 1. Constructing a de novo transcriptome and a reference proteome for the bivalve Scrobicularia plana: Comparative analysis of different assembly strategies and proteomic analysis.
    Amil-Ruiz F; Herruzo-Ruiz AM; Fuentes-Almagro C; Baena-Angulo C; Jiménez-Pastor JM; Blasco J; Alhama J; Michán C
    Genomics; 2021 May; 113(3):1543-1553. PubMed ID: 33774165
    [TBL] [Abstract][Full Text] [Related]  

  • 2. 454 pyrosequencing-based analysis of gene expression profiles in the amphipod Melita plumulosa: transcriptome assembly and toxicant induced changes.
    Hook SE; Twine NA; Simpson SL; Spadaro DA; Moncuquet P; Wilkins MR
    Aquat Toxicol; 2014 Aug; 153():73-88. PubMed ID: 24434169
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Draft de novo transcriptome assembly and proteome characterization of the electric lobe of Tetronarce californica: a molecular tool for the study of cholinergic neurotransmission in the electric organ.
    Stavrianakou M; Perez R; Wu C; Sachs MS; Aramayo R; Harlow M
    BMC Genomics; 2017 Aug; 18(1):611. PubMed ID: 28806931
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Ion Torrent and lllumina, two complementary RNA-seq platforms for constructing the holm oak (Quercus ilex) transcriptome.
    Guerrero-Sanchez VM; Maldonado-Alconada AM; Amil-Ruiz F; Verardi A; Jorrín-Novo JV; Rey MD
    PLoS One; 2019; 14(1):e0210356. PubMed ID: 30650136
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Optimization of de novo transcriptome assembly from high-throughput short read sequencing data improves functional annotation for non-model organisms.
    Haznedaroglu BZ; Reeves D; Rismani-Yazdi H; Peccia J
    BMC Bioinformatics; 2012 Jul; 13():170. PubMed ID: 22808927
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Tidings from the Tides-De novo transcriptome assembly of the endemic estuarine bivalve Villorita cyprinoides.
    Rahuman S; N S J; Sebastian W; Varghese E; P K A
    Sci Data; 2024 Jul; 11(1):723. PubMed ID: 38956059
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Comparison of De Novo Transcriptome Assemblers and k-mer Strategies Using the Killifish, Fundulus heteroclitus.
    Rana SB; Zadlock FJ; Zhang Z; Murphy WR; Bentivegna CS
    PLoS One; 2016; 11(4):e0153104. PubMed ID: 27054874
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Comparative performance of transcriptome assembly methods for non-model organisms.
    Huang X; Chen XG; Armbruster PA
    BMC Genomics; 2016 Jul; 17():523. PubMed ID: 27464550
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Assembly and annotation of a non-model gastropod (Nerita melanotragus) transcriptome: a comparison of de novo assemblers.
    Amin S; Prentis PJ; Gilding EK; Pavasovic A
    BMC Res Notes; 2014 Aug; 7():488. PubMed ID: 25084827
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Development of molecular resources for an intertidal clam, Sinonovacula constricta, using 454 transcriptome sequencing.
    Niu D; Wang L; Sun F; Liu Z; Li J
    PLoS One; 2013; 8(7):e67456. PubMed ID: 23935831
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Sequencing, De Novo Assembly, and Annotation of the Transcriptome of the Endangered Freshwater Pearl Bivalve, Cristaria plicata, Provides Novel Insights into Functional Genes and Marker Discovery.
    Patnaik BB; Wang TH; Kang SW; Hwang HJ; Park SY; Park EB; Chung JM; Song DK; Kim C; Kim S; Lee JS; Han YS; Park HS; Lee YS
    PLoS One; 2016; 11(2):e0148622. PubMed ID: 26872384
    [TBL] [Abstract][Full Text] [Related]  

  • 12. The Whole-Genome and Transcriptome of the Manila Clam (Ruditapes philippinarum).
    Mun S; Kim YJ; Markkandan K; Shin W; Oh S; Woo J; Yoo J; An H; Han K
    Genome Biol Evol; 2017 Jun; 9(6):1487-1498. PubMed ID: 28505302
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Developmental Transcriptome Analysis and Identification of Genes Involved in Larval Metamorphosis of the Razor Clam, Sinonovacula constricta.
    Niu D; Wang F; Xie S; Sun F; Wang Z; Peng M; Li J
    Mar Biotechnol (NY); 2016 Apr; 18(2):168-75. PubMed ID: 26921240
    [TBL] [Abstract][Full Text] [Related]  

  • 14. The central nervous system transcriptome of the weakly electric brown ghost knifefish (Apteronotus leptorhynchus): de novo assembly, annotation, and proteomics validation.
    Salisbury JP; Sîrbulescu RF; Moran BM; Auclair JR; Zupanc GK; Agar JN
    BMC Genomics; 2015 Mar; 16(1):166. PubMed ID: 25879418
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Combining transcriptome assemblies from multiple de novo assemblers in the allo-tetraploid plant Nicotiana benthamiana.
    Nakasugi K; Crowhurst R; Bally J; Waterhouse P
    PLoS One; 2014; 9(3):e91776. PubMed ID: 24614631
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Construction of a public CHO cell line transcript database using versatile bioinformatics analysis pipelines.
    Rupp O; Becker J; Brinkrolf K; Timmermann C; Borth N; Pühler A; Noll T; Goesmann A
    PLoS One; 2014; 9(1):e85568. PubMed ID: 24427317
    [TBL] [Abstract][Full Text] [Related]  

  • 17. De novo transcriptome assembly for a non-model species, the blood-sucking bug Triatoma brasiliensis, a vector of Chagas disease.
    Marchant A; Mougel F; Almeida C; Jacquin-Joly E; Costa J; Harry M
    Genetica; 2015 Apr; 143(2):225-39. PubMed ID: 25233990
    [TBL] [Abstract][Full Text] [Related]  

  • 18. The use of -omic tools in the study of disease processes in marine bivalve mollusks.
    Gómez-Chiarri M; Guo X; Tanguy A; He Y; Proestou D
    J Invertebr Pathol; 2015 Oct; 131():137-54. PubMed ID: 26021714
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Evaluating characteristics of de novo assembly software on 454 transcriptome data: a simulation approach.
    Mundry M; Bornberg-Bauer E; Sammeth M; Feulner PG
    PLoS One; 2012; 7(2):e31410. PubMed ID: 22384018
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Transcriptome profiling suggests roles of innate immunity and digestion metabolism in purplish Washington clam.
    Kim BM; Ahn DH; Kim H; Lee JS; Rhee JS; Park H
    Genes Genomics; 2019 Feb; 41(2):183-191. PubMed ID: 30306501
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.