136 related articles for article (PubMed ID: 33774575)
1. Evaluation of nanopore sequencing technology to identify Salmonella enterica Choleraesuis var. Kunzendorf and Orion var. 15
Xu F; Ge C; Li S; Tang S; Wu X; Luo H; Deng X; Zhang G; Stevenson A; Baker RC
Int J Food Microbiol; 2021 May; 346():109167. PubMed ID: 33774575
[TBL] [Abstract][Full Text] [Related]
2. Evaluation of real-time nanopore sequencing for Salmonella serotype prediction.
Xu F; Ge C; Luo H; Li S; Wiedmann M; Deng X; Zhang G; Stevenson A; Baker RC; Tang S
Food Microbiol; 2020 Aug; 89():103452. PubMed ID: 32138998
[TBL] [Abstract][Full Text] [Related]
3. Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens.
Bogaerts B; Van den Bossche A; Verhaegen B; Delbrassinne L; Mattheus W; Nouws S; Godfroid M; Hoffman S; Roosens NHC; De Keersmaecker SCJ; Vanneste K
J Clin Microbiol; 2024 May; 62(5):e0157623. PubMed ID: 38441926
[TBL] [Abstract][Full Text] [Related]
4. Comparison of Illumina versus Nanopore 16S rRNA Gene Sequencing of the Human Nasal Microbiota.
Heikema AP; Horst-Kreft D; Boers SA; Jansen R; Hiltemann SD; de Koning W; Kraaij R; de Ridder MAJ; van Houten CB; Bont LJ; Stubbs AP; Hays JP
Genes (Basel); 2020 Sep; 11(9):. PubMed ID: 32967250
[TBL] [Abstract][Full Text] [Related]
5. Subtyping Evaluation of
Xian Z; Li S; Mann DA; Huang Y; Xu F; Wu X; Tang S; Zhang G; Stevenson A; Ge C; Deng X
Appl Environ Microbiol; 2022 Aug; 88(15):e0078522. PubMed ID: 35867567
[TBL] [Abstract][Full Text] [Related]
6. Advancing metagenome-assembled genome-based pathogen identification: unraveling the power of long-read assembly algorithms in Oxford Nanopore sequencing.
Chen Z; Grim CJ; Ramachandran P; Meng J
Microbiol Spectr; 2024 Jun; 12(6):e0011724. PubMed ID: 38687063
[TBL] [Abstract][Full Text] [Related]
7. Evaluation of
Wu X; Luo H; Xu F; Ge C; Li S; Deng X; Wiedmann M; Baker RC; Stevenson A; Zhang G; Tang S
Front Microbiol; 2021; 12():637771. PubMed ID: 33776971
[TBL] [Abstract][Full Text] [Related]
8. Molecular typing and antimicrobial resistance of Salmonella enterica subspecies enterica serovar Choleraesuis isolates from diseased pigs in Japan.
Asai T; Namimatsu T; Osumi T; Kojima A; Harada K; Aoki H; Sameshima T; Takahashi T
Comp Immunol Microbiol Infect Dis; 2010 Mar; 33(2):109-19. PubMed ID: 18809209
[TBL] [Abstract][Full Text] [Related]
9. Implications of Mobile Genetic Elements for
Li S; Zhang S; Baert L; Jagadeesan B; Ngom-Bru C; Griswold T; Katz LS; Carleton HA; Deng X
Appl Environ Microbiol; 2019 Dec; 85(24):. PubMed ID: 31585993
[TBL] [Abstract][Full Text] [Related]
10. Application of ribotyping and IS200 fingerprinting to distinguish the five Salmonella serotype O6,7:c:1,5 groups: Choleraesuis sensu stricto, Choleraesuis var. Kunzendorf, Choleraesuis var. Decatur, Paratyphi C, and Typhisuis.
Uzzau S; Hovi M; Stocker BA
Epidemiol Infect; 1999 Aug; 123(1):37-46. PubMed ID: 10487640
[TBL] [Abstract][Full Text] [Related]
11. Reappearance of Salmonella serovar Choleraesuis var. Kunzendorf in Danish pig herds.
Pedersen K; Sørensen G; Löfström C; Leekitcharoenphon P; Nielsen B; Wingstrand A; Aarestrup FM; Hendriksen RS; Baggesen DL
Vet Microbiol; 2015 Apr; 176(3-4):282-91. PubMed ID: 25703158
[TBL] [Abstract][Full Text] [Related]
12. Characterizing
Longo A; Petrin S; Mastrorilli E; Tiengo A; Lettini AA; Barco L; Ricci A; Losasso C; Cibin V
Front Vet Sci; 2019; 6():316. PubMed ID: 31620457
[TBL] [Abstract][Full Text] [Related]
13. Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5],12:i:
Saltykova A; Wuyts V; Mattheus W; Bertrand S; Roosens NHC; Marchal K; De Keersmaecker SCJ
PLoS One; 2018; 13(2):e0192504. PubMed ID: 29408896
[TBL] [Abstract][Full Text] [Related]
14. Rapid, multiplexed, whole genome and plasmid sequencing of foodborne pathogens using long-read nanopore technology.
Taylor TL; Volkening JD; DeJesus E; Simmons M; Dimitrov KM; Tillman GE; Suarez DL; Afonso CL
Sci Rep; 2019 Nov; 9(1):16350. PubMed ID: 31704961
[TBL] [Abstract][Full Text] [Related]
15. Do we still need Illumina sequencing data? Evaluating Oxford Nanopore Technologies R10.4.1 flow cells and the Rapid v14 library prep kit for Gram negative bacteria whole genome assemblies.
Lerminiaux N; Fakharuddin K; Mulvey MR; Mataseje L
Can J Microbiol; 2024 May; 70(5):178-189. PubMed ID: 38354391
[TBL] [Abstract][Full Text] [Related]
16. Rapid High-Resolution Typing of Class I HLA Genes by Nanopore Sequencing.
Liu C; Berry R
Methods Mol Biol; 2020; 2120():93-99. PubMed ID: 32124313
[TBL] [Abstract][Full Text] [Related]
17. High quality genome assemblies of Mycoplasma bovis using a taxon-specific Bonito basecaller for MinION and Flongle long-read nanopore sequencing.
Vereecke N; Bokma J; Haesebrouck F; Nauwynck H; Boyen F; Pardon B; Theuns S
BMC Bioinformatics; 2020 Nov; 21(1):517. PubMed ID: 33176691
[TBL] [Abstract][Full Text] [Related]
18. Comparison of De Novo Assembly Strategies for Bacterial Genomes.
Zhang P; Jiang D; Wang Y; Yao X; Luo Y; Yang Z
Int J Mol Sci; 2021 Jul; 22(14):. PubMed ID: 34299288
[TBL] [Abstract][Full Text] [Related]
19. Quasimetagenomics-Based and Real-Time-Sequencing-Aided Detection and Subtyping of Salmonella enterica from Food Samples.
Hyeon JY; Li S; Mann DA; Zhang S; Li Z; Chen Y; Deng X
Appl Environ Microbiol; 2018 Feb; 84(4):. PubMed ID: 29196295
[TBL] [Abstract][Full Text] [Related]
20. Forensic nanopore sequencing of STRs and SNPs using Verogen's ForenSeq DNA Signature Prep Kit and MinION.
Ren ZL; Zhang JR; Zhang XM; Liu X; Lin YF; Bai H; Wang MC; Cheng F; Liu JD; Li P; Kong L; Bo XC; Wang SQ; Ni M; Yan JW
Int J Legal Med; 2021 Sep; 135(5):1685-1693. PubMed ID: 33950286
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
