251 related articles for article (PubMed ID: 33775256)
1. animalcules: interactive microbiome analytics and visualization in R.
Zhao Y; Federico A; Faits T; Manimaran S; Segrè D; Monti S; Johnson WE
Microbiome; 2021 Mar; 9(1):76. PubMed ID: 33775256
[TBL] [Abstract][Full Text] [Related]
2. MicrobiomeAnalyst: a web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data.
Dhariwal A; Chong J; Habib S; King IL; Agellon LB; Xia J
Nucleic Acids Res; 2017 Jul; 45(W1):W180-W188. PubMed ID: 28449106
[TBL] [Abstract][Full Text] [Related]
3. cytoviewer: an R/Bioconductor package for interactive visualization and exploration of highly multiplexed imaging data.
Meyer L; Eling N; Bodenmiller B
BMC Bioinformatics; 2024 Jan; 25(1):9. PubMed ID: 38172724
[TBL] [Abstract][Full Text] [Related]
4. Dynamic assessment of microbial ecology (DAME): a web app for interactive analysis and visualization of microbial sequencing data.
Piccolo BD; Wankhade UD; Chintapalli SV; Bhattacharyya S; Chunqiao L; Shankar K
Bioinformatics; 2018 Mar; 34(6):1050-1052. PubMed ID: 29087435
[TBL] [Abstract][Full Text] [Related]
5. GeneTonic: an R/Bioconductor package for streamlining the interpretation of RNA-seq data.
Marini F; Ludt A; Linke J; Strauch K
BMC Bioinformatics; 2021 Dec; 22(1):610. PubMed ID: 34949163
[TBL] [Abstract][Full Text] [Related]
6. microbiomeMarker: an R/Bioconductor package for microbiome marker identification and visualization.
Cao Y; Dong Q; Wang D; Zhang P; Liu Y; Niu C
Bioinformatics; 2022 Aug; 38(16):4027-4029. PubMed ID: 35771644
[TBL] [Abstract][Full Text] [Related]
7. RevEcoR: an R package for the reverse ecology analysis of microbiomes.
Cao Y; Wang Y; Zheng X; Li F; Bo X
BMC Bioinformatics; 2016 Jul; 17(1):294. PubMed ID: 27473172
[TBL] [Abstract][Full Text] [Related]
8. Pavian: interactive analysis of metagenomics data for microbiome studies and pathogen identification.
Breitwieser FP; Salzberg SL
Bioinformatics; 2020 Feb; 36(4):1303-1304. PubMed ID: 31553437
[TBL] [Abstract][Full Text] [Related]
9. The best practice for microbiome analysis using R.
Wen T; Niu G; Chen T; Shen Q; Yuan J; Liu YX
Protein Cell; 2023 Oct; 14(10):713-725. PubMed ID: 37128855
[TBL] [Abstract][Full Text] [Related]
10. VITCOMIC2: visualization tool for the phylogenetic composition of microbial communities based on 16S rRNA gene amplicons and metagenomic shotgun sequencing.
Mori H; Maruyama T; Yano M; Yamada T; Kurokawa K
BMC Syst Biol; 2018 Mar; 12(Suppl 2):30. PubMed ID: 29560821
[TBL] [Abstract][Full Text] [Related]
11. Current challenges and best-practice protocols for microbiome analysis.
Bharti R; Grimm DG
Brief Bioinform; 2021 Jan; 22(1):178-193. PubMed ID: 31848574
[TBL] [Abstract][Full Text] [Related]
12. ivTerm-An R package for interactive visualization of functional analysis results of meta-omics data.
Dong X; Xue H; Wei C
J Cell Biochem; 2021 Oct; 122(10):1428-1434. PubMed ID: 34132422
[TBL] [Abstract][Full Text] [Related]
13. MicrobiomeExplorer: an R package for the analysis and visualization of microbial communities.
Reeder J; Huang M; Kaminker JS; Paulson JN
Bioinformatics; 2021 Jun; 37(9):1317-1318. PubMed ID: 32960962
[TBL] [Abstract][Full Text] [Related]
14. SHAMAN: a user-friendly website for metataxonomic analysis from raw reads to statistical analysis.
Volant S; Lechat P; Woringer P; Motreff L; Campagne P; Malabat C; Kennedy S; Ghozlane A
BMC Bioinformatics; 2020 Aug; 21(1):345. PubMed ID: 32778056
[TBL] [Abstract][Full Text] [Related]
15. MegaR: an interactive R package for rapid sample classification and phenotype prediction using metagenome profiles and machine learning.
Dhungel E; Mreyoud Y; Gwak HJ; Rajeh A; Rho M; Ahn TH
BMC Bioinformatics; 2021 Jan; 22(1):25. PubMed ID: 33461494
[TBL] [Abstract][Full Text] [Related]
16. ideal: an R/Bioconductor package for interactive differential expression analysis.
Marini F; Linke J; Binder H
BMC Bioinformatics; 2020 Dec; 21(1):565. PubMed ID: 33297942
[TBL] [Abstract][Full Text] [Related]
17. Analysis of the intestinal microbiota using SOLiD 16S rRNA gene sequencing and SOLiD shotgun sequencing.
Mitra S; Förster-Fromme K; Damms-Machado A; Scheurenbrand T; Biskup S; Huson DH; Bischoff SC
BMC Genomics; 2013; 14 Suppl 5(Suppl 5):S16. PubMed ID: 24564472
[TBL] [Abstract][Full Text] [Related]
18. Interactive exploratory data analysis of Integrative Human Microbiome Project data using Metaviz.
Wagner J; Kancherla J; Braccia D; Matsumara J; Felix V; Crabtree J; Mahurkar A; Corrada Bravo H
F1000Res; 2020; 9():601. PubMed ID: 32742640
[TBL] [Abstract][Full Text] [Related]
19. Cultivation-independent genomes greatly expand taxonomic-profiling capabilities of mOTUs across various environments.
Ruscheweyh HJ; Milanese A; Paoli L; Karcher N; Clayssen Q; Keller MI; Wirbel J; Bork P; Mende DR; Zeller G; Sunagawa S
Microbiome; 2022 Dec; 10(1):212. PubMed ID: 36464731
[TBL] [Abstract][Full Text] [Related]
20. MetaComp: comprehensive analysis software for comparative meta-omics including comparative metagenomics.
Zhai P; Yang L; Guo X; Wang Z; Guo J; Wang X; Zhu H
BMC Bioinformatics; 2017 Oct; 18(1):434. PubMed ID: 28969605
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
