293 related articles for article (PubMed ID: 33788942)
1. Conserved DNA sequence features underlie pervasive RNA polymerase pausing.
Gajos M; Jasnovidova O; van Bömmel A; Freier S; Vingron M; Mayer A
Nucleic Acids Res; 2021 May; 49(8):4402-4420. PubMed ID: 33788942
[TBL] [Abstract][Full Text] [Related]
2. Pausing sites of RNA polymerase II on actively transcribed genes are enriched in DNA double-stranded breaks.
Singh S; Szlachta K; Manukyan A; Raimer HM; Dinda M; Bekiranov S; Wang YH
J Biol Chem; 2020 Mar; 295(12):3990-4000. PubMed ID: 32029477
[TBL] [Abstract][Full Text] [Related]
3. Genome-wide profiling of RNA polymerase transcription at nucleotide resolution in human cells with native elongating transcript sequencing.
Mayer A; Churchman LS
Nat Protoc; 2016 Apr; 11(4):813-33. PubMed ID: 27010758
[TBL] [Abstract][Full Text] [Related]
4. Native elongating transcript sequencing reveals human transcriptional activity at nucleotide resolution.
Mayer A; di Iulio J; Maleri S; Eser U; Vierstra J; Reynolds A; Sandstrom R; Stamatoyannopoulos JA; Churchman LS
Cell; 2015 Apr; 161(3):541-554. PubMed ID: 25910208
[TBL] [Abstract][Full Text] [Related]
5. A machine learning-based framework for modeling transcription elongation.
Feng P; Xiao A; Fang M; Wan F; Li S; Lang P; Zhao D; Zeng J
Proc Natl Acad Sci U S A; 2021 Feb; 118(6):. PubMed ID: 33526657
[TBL] [Abstract][Full Text] [Related]
6. RNA Polymerase II Promoter-Proximal Pausing and Release to Elongation Are Key Steps Regulating Herpes Simplex Virus 1 Transcription.
Birkenheuer CH; Baines JD
J Virol; 2020 Feb; 94(5):. PubMed ID: 31826988
[TBL] [Abstract][Full Text] [Related]
7. Pause & go: from the discovery of RNA polymerase pausing to its functional implications.
Mayer A; Landry HM; Churchman LS
Curr Opin Cell Biol; 2017 Jun; 46():72-80. PubMed ID: 28363125
[TBL] [Abstract][Full Text] [Related]
8. Genome-wide RNA pol II initiation and pausing in neural progenitors of the rat.
Scheidegger A; Dunn CJ; Samarakkody A; Koney NK; Perley D; Saha RN; Nechaev S
BMC Genomics; 2019 Jun; 20(1):477. PubMed ID: 31185909
[TBL] [Abstract][Full Text] [Related]
9. TRIM28 regulates RNA polymerase II promoter-proximal pausing and pause release.
Bunch H; Zheng X; Burkholder A; Dillon ST; Motola S; Birrane G; Ebmeier CC; Levine S; Fargo D; Hu G; Taatjes DJ; Calderwood SK
Nat Struct Mol Biol; 2014 Oct; 21(10):876-83. PubMed ID: 25173174
[TBL] [Abstract][Full Text] [Related]
10. PTEN modulates gene transcription by redistributing genome-wide RNA polymerase II occupancy.
Abbas A; Padmanabhan R; Romigh T; Eng C
Hum Mol Genet; 2019 Sep; 28(17):2826-2834. PubMed ID: 31127935
[TBL] [Abstract][Full Text] [Related]
11. Mammalian NET-Seq Reveals Genome-wide Nascent Transcription Coupled to RNA Processing.
Nojima T; Gomes T; Grosso ARF; Kimura H; Dye MJ; Dhir S; Carmo-Fonseca M; Proudfoot NJ
Cell; 2015 Apr; 161(3):526-540. PubMed ID: 25910207
[TBL] [Abstract][Full Text] [Related]
12. cis Elements that Mediate RNA Polymerase II Pausing Regulate Human Gene Expression.
Watts JA; Burdick J; Daigneault J; Zhu Z; Grunseich C; Bruzel A; Cheung VG
Am J Hum Genet; 2019 Oct; 105(4):677-688. PubMed ID: 31495490
[TBL] [Abstract][Full Text] [Related]
13. Timing RNA polymerase pausing with TV-PRO-seq.
Zhang J; Cavallaro M; Hebenstreit D
Cell Rep Methods; 2021 Oct; 1(6):None. PubMed ID: 34723238
[TBL] [Abstract][Full Text] [Related]
14. Alternative DNA secondary structure formation affects RNA polymerase II promoter-proximal pausing in human.
Szlachta K; Thys RG; Atkin ND; Pierce LCT; Bekiranov S; Wang YH
Genome Biol; 2018 Jul; 19(1):89. PubMed ID: 30001206
[TBL] [Abstract][Full Text] [Related]
15. HSV-1 Infection Induces a Downstream Shift of Promoter-Proximal Pausing for Host Genes.
Weiß E; Hennig T; Graßl P; Djakovic L; Whisnant AW; Jürges CS; Koller F; Kluge M; Erhard F; Dölken L; Friedel CC
J Virol; 2023 May; 97(5):e0038123. PubMed ID: 37093003
[TBL] [Abstract][Full Text] [Related]
16. Comprehensive analysis of promoter-proximal RNA polymerase II pausing across mammalian cell types.
Day DS; Zhang B; Stevens SM; Ferrari F; Larschan EN; Park PJ; Pu WT
Genome Biol; 2016 Jun; 17(1):120. PubMed ID: 27259512
[TBL] [Abstract][Full Text] [Related]
17. Reporter-ChIP-nexus reveals strong contribution of the
Shao W; Alcantara SG; Zeitlinger J
Elife; 2019 Apr; 8():. PubMed ID: 31021316
[TBL] [Abstract][Full Text] [Related]
18. Transcriptional pause, arrest and termination sites for RNA polymerase II in mammalian N- and c-myc genes.
Keene RG; Mueller A; Landick R; London L
Nucleic Acids Res; 1999 Aug; 27(15):3173-82. PubMed ID: 10454615
[TBL] [Abstract][Full Text] [Related]
19. Promoter-proximal pausing of RNA polymerase II defines a general rate-limiting step after transcription initiation.
Krumm A; Hickey LB; Groudine M
Genes Dev; 1995 Mar; 9(5):559-72. PubMed ID: 7698646
[TBL] [Abstract][Full Text] [Related]
20. Mapping and characterization of transcriptional pause sites in the early genetic region of bacteriophage T7.
Levin JR; Chamberlin MJ
J Mol Biol; 1987 Jul; 196(1):61-84. PubMed ID: 2821285
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]