BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

173 related articles for article (PubMed ID: 33788948)

  • 1. Effects of sheared chromatin length on ChIP-seq quality and sensitivity.
    Keller CA; Wixom AQ; Heuston EF; Giardine B; Hsiung CC; Long MR; Miller A; Anderson SM; Cockburn A; Blobel GA; Bodine DM; Hardison RC
    G3 (Bethesda); 2021 Jun; 11(6):. PubMed ID: 33788948
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Standardizing chromatin research: a simple and universal method for ChIP-seq.
    Arrigoni L; Richter AS; Betancourt E; Bruder K; Diehl S; Manke T; Bönisch U
    Nucleic Acids Res; 2016 Apr; 44(7):e67. PubMed ID: 26704968
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Genome-Wide Profiling of Histone Modifications with ChIP-Seq.
    Ricci WA; Levin L; Zhang X
    Methods Mol Biol; 2020; 2072():101-117. PubMed ID: 31541441
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Quantitative Comparison of Multiple Chromatin Immunoprecipitation-Sequencing (ChIP-seq) Experiments with spikChIP.
    Blanco E; Ballaré C; Di Croce L; Aranda S
    Methods Mol Biol; 2023; 2624():55-72. PubMed ID: 36723809
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Unified Analysis of Multiple ChIP-Seq Datasets.
    Ma G; Babarinde IA; Zhuang Q; Hutchins AP
    Methods Mol Biol; 2021; 2198():451-465. PubMed ID: 32822050
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Statistical Analysis in ChIP-seq-Related Applications.
    Teng M
    Methods Mol Biol; 2023; 2629():169-181. PubMed ID: 36929078
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Distinct features of lamin A-interacting chromatin domains mapped by ChIP-sequencing from sonicated or micrococcal nuclease-digested chromatin.
    Lund EG; Duband-Goulet I; Oldenburg A; Buendia B; Collas P
    Nucleus; 2015; 6(1):30-9. PubMed ID: 25602132
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Commercial ChIP-Seq Library Preparation Kits Performed Differently for Different Classes of Protein Targets.
    Simper MS; Coletta LD; Gaddis S; Lin K; Mikulec CD; Takata T; Tomida MW; Zhang D; Tang DG; Estecio MR; Shen J; Lu Y
    J Biomol Tech; 2022 Oct; 33(3):. PubMed ID: 36910579
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Genome-Wide Identification of Transcription Factor-Binding Sites in Quiescent Adult Neural Stem Cells.
    Mukherjee S; Hsieh J
    Methods Mol Biol; 2018; 1686():265-286. PubMed ID: 29030827
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A plug and play microfluidic platform for standardized sensitive low-input chromatin immunoprecipitation.
    Dirks RAM; Thomas PC; Wu H; Jones RC; Stunnenberg HG; Marks H
    Genome Res; 2021 May; 31(5):919-933. PubMed ID: 33707229
    [TBL] [Abstract][Full Text] [Related]  

  • 11. 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs.
    Ibn-Salem J; Andrade-Navarro MA
    BMC Genomics; 2019 Oct; 20(1):777. PubMed ID: 31653198
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Chromatin immunoprecipitation and multiplex sequencing (ChIP-Seq) to identify global transcription factor binding sites in the nematode Caenorhabditis elegans.
    Brdlik CM; Niu W; Snyder M
    Methods Enzymol; 2014; 539():89-111. PubMed ID: 24581441
    [TBL] [Abstract][Full Text] [Related]  

  • 13. ChIP-seq Analysis of Condensin Complex in Cultured Mammalian Cells.
    Sakata T; Shirahige K; Sutani T
    Methods Mol Biol; 2017; 1515():257-271. PubMed ID: 27797085
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Bioinformatics Methods for ChIP-seq Histone Analysis.
    Servant N
    Methods Mol Biol; 2022; 2529():267-293. PubMed ID: 35733020
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Chromatin Immunoprecipitation Sequencing (ChIP-seq) for Detecting Histone Modifications and Modifiers.
    Hino S; Sato T; Nakao M
    Methods Mol Biol; 2023; 2577():55-64. PubMed ID: 36173565
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Greenscreen: A simple method to remove artifactual signals and enrich for true peaks in genomic datasets including ChIP-seq data.
    Klasfeld S; Roulé T; Wagner D
    Plant Cell; 2022 Nov; 34(12):4795-4815. PubMed ID: 36124976
    [TBL] [Abstract][Full Text] [Related]  

  • 17. How to Tackle Challenging ChIP-Seq, with Long-Range Cross-Linking, Using ATRX as an Example.
    Truch J; Telenius J; Higgs DR; Gibbons RJ
    Methods Mol Biol; 2018; 1832():105-130. PubMed ID: 30073524
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Active promoters give rise to false positive 'Phantom Peaks' in ChIP-seq experiments.
    Jain D; Baldi S; Zabel A; Straub T; Becker PB
    Nucleic Acids Res; 2015 Aug; 43(14):6959-68. PubMed ID: 26117547
    [TBL] [Abstract][Full Text] [Related]  

  • 19. CATCH-UP: A High-Throughput Upstream-Pipeline for Bulk ATAC-Seq and ChIP-Seq Data.
    Riva SG; Georgiades E; Gur ER; Baxter M; Hughes JR
    J Vis Exp; 2023 Sep; (199):. PubMed ID: 37811941
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Chromatin immunoprecipitation and chromatin immunoprecipitation with massively parallel sequencing on mouse embryonic tissue.
    Amin S; Bobola N
    Methods Mol Biol; 2014; 1196():231-9. PubMed ID: 25151167
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.