175 related articles for article (PubMed ID: 33790270)
1. Harnessing machine learning to guide phylogenetic-tree search algorithms.
Azouri D; Abadi S; Mansour Y; Mayrose I; Pupko T
Nat Commun; 2021 Mar; 12(1):1983. PubMed ID: 33790270
[TBL] [Abstract][Full Text] [Related]
2. The Tree Reconstruction Game: Phylogenetic Reconstruction Using Reinforcement Learning.
Azouri D; Granit O; Alburquerque M; Mansour Y; Pupko T; Mayrose I
Mol Biol Evol; 2024 Jun; 41(6):. PubMed ID: 38829798
[TBL] [Abstract][Full Text] [Related]
3. Efficiencies of fast algorithms of phylogenetic inference under the criteria of maximum parsimony, minimum evolution, and maximum likelihood when a large number of sequences are used.
Takahashi K; Nei M
Mol Biol Evol; 2000 Aug; 17(8):1251-8. PubMed ID: 10908645
[TBL] [Abstract][Full Text] [Related]
4. Adaptive RAxML-NG: Accelerating Phylogenetic Inference under Maximum Likelihood using Dataset Difficulty.
Togkousidis A; Kozlov OM; Haag J; Höhler D; Stamatakis A
Mol Biol Evol; 2023 Oct; 40(10):. PubMed ID: 37804116
[TBL] [Abstract][Full Text] [Related]
5. A genetic algorithm for maximum-likelihood phylogeny inference using nucleotide sequence data.
Lewis PO
Mol Biol Evol; 1998 Mar; 15(3):277-83. PubMed ID: 9501494
[TBL] [Abstract][Full Text] [Related]
6. Coalescent-based species tree inference from gene tree topologies under incomplete lineage sorting by maximum likelihood.
Wu Y
Evolution; 2012 Mar; 66(3):763-775. PubMed ID: 22380439
[TBL] [Abstract][Full Text] [Related]
7. Inferring Trees.
Whelan S; Morrison DA
Methods Mol Biol; 2017; 1525():349-377. PubMed ID: 27896728
[TBL] [Abstract][Full Text] [Related]
8. Exact solutions for species tree inference from discordant gene trees.
Chang WC; Górecki P; Eulenstein O
J Bioinform Comput Biol; 2013 Oct; 11(5):1342005. PubMed ID: 24131054
[TBL] [Abstract][Full Text] [Related]
9. On the quality of tree-based protein classification.
Lazareva-Ulitsky B; Diemer K; Thomas PD
Bioinformatics; 2005 May; 21(9):1876-90. PubMed ID: 15647305
[TBL] [Abstract][Full Text] [Related]
10. The prevalence of multifurcations in tree-space and their implications for tree-search.
Whelan S; Money D
Mol Biol Evol; 2010 Dec; 27(12):2674-7. PubMed ID: 20584772
[TBL] [Abstract][Full Text] [Related]
11. Bayesian and maximum likelihood phylogenetic analyses of protein sequence data under relative branch-length differences and model violation.
Mar JC; Harlow TJ; Ragan MA
BMC Evol Biol; 2005 Jan; 5():8. PubMed ID: 15676079
[TBL] [Abstract][Full Text] [Related]
12. Computing Manhattan Path-Difference Median Trees: A Practical Local Search Approach.
Markin A; Eulenstein O
IEEE/ACM Trans Comput Biol Bioinform; 2019; 16(4):1063-1076. PubMed ID: 28650824
[TBL] [Abstract][Full Text] [Related]
13. A structural EM algorithm for phylogenetic inference.
Friedman N; Ninio M; Pe'er I; Pupko T
J Comput Biol; 2002; 9(2):331-53. PubMed ID: 12015885
[TBL] [Abstract][Full Text] [Related]
14. Genetic algorithm-based maximum-likelihood analysis for molecular phylogeny.
Katoh K; Kuma K; Miyata T
J Mol Evol; 2001; 53(4-5):477-84. PubMed ID: 11675608
[TBL] [Abstract][Full Text] [Related]
15. DPRml: distributed phylogeny reconstruction by maximum likelihood.
Keane TM; Naughton TJ; Travers SA; McInerney JO; McCormack GP
Bioinformatics; 2005 Apr; 21(7):969-74. PubMed ID: 15513992
[TBL] [Abstract][Full Text] [Related]
16. NJML: a hybrid algorithm for the neighbor-joining and maximum-likelihood methods.
Ota S; Li WH
Mol Biol Evol; 2000 Sep; 17(9):1401-9. PubMed ID: 10958856
[TBL] [Abstract][Full Text] [Related]
17. Direct maximum parsimony phylogeny reconstruction from genotype data.
Sridhar S; Lam F; Blelloch GE; Ravi R; Schwartz R
BMC Bioinformatics; 2007 Dec; 8():472. PubMed ID: 18053244
[TBL] [Abstract][Full Text] [Related]
18. Representation in stochastic search for phylogenetic tree reconstruction.
Weber G; Ohno-Machado L; Shieber S
J Biomed Inform; 2006 Feb; 39(1):43-50. PubMed ID: 16359929
[TBL] [Abstract][Full Text] [Related]
19. Exact median-tree inference for unrooted reconciliation costs.
Górecki P; Markin A; Eulenstein O
BMC Evol Biol; 2020 Oct; 20(Suppl 1):136. PubMed ID: 33115401
[TBL] [Abstract][Full Text] [Related]
20. A heuristic approach of maximum likelihood method for inferring phylogenetic tree and an application to the mammalian SOX-3 origin of the testis-determining gene SRY.
Katoh K; Miyata T
FEBS Lett; 1999 Dec; 463(1-2):129-32. PubMed ID: 10601652
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
