These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
126 related articles for article (PubMed ID: 33796271)
1. Fast effect size shrinkage software for beta-binomial models of allelic imbalance. Zitovsky JP; Love MI F1000Res; 2019; 8():2024. PubMed ID: 33796271 [TBL] [Abstract][Full Text] [Related]
2. Heavy-tailed prior distributions for sequence count data: removing the noise and preserving large differences. Zhu A; Ibrahim JG; Love MI Bioinformatics; 2019 Jun; 35(12):2084-2092. PubMed ID: 30395178 [TBL] [Abstract][Full Text] [Related]
3. Airpart: interpretable statistical models for analyzing allelic imbalance in single-cell datasets. Mu W; Sarkar H; Srivastava A; Choi K; Patro R; Love MI Bioinformatics; 2022 May; 38(10):2773-2780. PubMed ID: 35561168 [TBL] [Abstract][Full Text] [Related]
5. A flexible Bayesian method for detecting allelic imbalance in RNA-seq data. León-Novelo LG; McIntyre LM; Fear JM; Graze RM BMC Genomics; 2014 Oct; 15(1):920. PubMed ID: 25339465 [TBL] [Abstract][Full Text] [Related]
6. AllelicImbalance: an R/bioconductor package for detecting, managing, and visualizing allele expression imbalance data from RNA sequencing. Gådin JR; van't Hooft FM; Eriksson P; Folkersen L BMC Bioinformatics; 2015 Jun; 16(1):194. PubMed ID: 26066318 [TBL] [Abstract][Full Text] [Related]
7. Negative binomial additive model for RNA-Seq data analysis. Ren X; Kuan PF BMC Bioinformatics; 2020 May; 21(1):171. PubMed ID: 32357831 [TBL] [Abstract][Full Text] [Related]
8. ISoLDE: a data-driven statistical method for the inference of allelic imbalance in datasets with reciprocal crosses. Reynès C; Kister G; Rohmer M; Bouschet T; Varrault A; Dubois E; Rialle S; Journot L; Sabatier R Bioinformatics; 2020 Jan; 36(2):504-513. PubMed ID: 31350542 [TBL] [Abstract][Full Text] [Related]
9. Removing reference mapping biases using limited or no genotype data identifies allelic differences in protein binding at disease-associated loci. Buchkovich ML; Eklund K; Duan Q; Li Y; Mohlke KL; Furey TS BMC Med Genomics; 2015 Jul; 8():43. PubMed ID: 26210163 [TBL] [Abstract][Full Text] [Related]
10. Testcrosses are an efficient strategy for identifying cis-regulatory variation: Bayesian analysis of allele-specific expression (BayesASE). Miller BR; Morse AM; Borgert JE; Liu Z; Sinclair K; Gamble G; Zou F; Newman JRB; León-Novelo LG; Marroni F; McIntyre LM G3 (Bethesda); 2021 May; 11(5):. PubMed ID: 33772539 [TBL] [Abstract][Full Text] [Related]
11. Power calculator for detecting allelic imbalance using hierarchical Bayesian model. Sherbina K; León-Novelo LG; Nuzhdin SV; McIntyre LM; Marroni F BMC Res Notes; 2021 Nov; 14(1):436. PubMed ID: 34838135 [TBL] [Abstract][Full Text] [Related]
12. Shrinkage estimation of effect sizes as an alternative to hypothesis testing followed by estimation in high-dimensional biology: applications to differential gene expression. Montazeri Z; Yanofsky CM; Bickel DR Stat Appl Genet Mol Biol; 2010; 9():Article23. PubMed ID: 20597849 [TBL] [Abstract][Full Text] [Related]
13. Analyzing allele specific RNA expression using mixture models. Lu R; Smith RM; Seweryn M; Wang D; Hartmann K; Webb A; Sadee W; Rempala GA BMC Genomics; 2015 Aug; 16(1):566. PubMed ID: 26231172 [TBL] [Abstract][Full Text] [Related]
14. A hidden Markov approach for ascertaining cSNP genotypes from RNA sequence data in the presence of allelic imbalance by exploiting linkage disequilibrium. Steibel JP; Wang H; Zhong PS BMC Bioinformatics; 2015 Feb; 16():61. PubMed ID: 25887316 [TBL] [Abstract][Full Text] [Related]
15. ASElux: an ultra-fast and accurate allelic reads counter. Miao Z; Alvarez M; Pajukanta P; Ko A Bioinformatics; 2018 Apr; 34(8):1313-1320. PubMed ID: 29186329 [TBL] [Abstract][Full Text] [Related]
16. Allelic imbalance metre (Allim), a new tool for measuring allele-specific gene expression with RNA-seq data. Pandey RV; Franssen SU; Futschik A; Schlötterer C Mol Ecol Resour; 2013 Jul; 13(4):740-5. PubMed ID: 23615333 [TBL] [Abstract][Full Text] [Related]
17. Performance of analytical methods for overdispersed counts in cluster randomized trials: sample size, degree of clustering and imbalance. Durán Pacheco G; Hattendorf J; Colford JM; Mäusezahl D; Smith T Stat Med; 2009 Oct; 28(24):2989-3011. PubMed ID: 19672840 [TBL] [Abstract][Full Text] [Related]
18. dsPIG: a tool to predict imprinted genes from the deep sequencing of whole transcriptomes. Li H; Su X; Gallegos J; Lu Y; Ji Y; Molldrem JJ; Liang S BMC Bioinformatics; 2012 Oct; 13():271. PubMed ID: 23083219 [TBL] [Abstract][Full Text] [Related]
19. BaalChIP: Bayesian analysis of allele-specific transcription factor binding in cancer genomes. de Santiago I; Liu W; Yuan K; O'Reilly M; Chilamakuri CS; Ponder BA; Meyer KB; Markowetz F Genome Biol; 2017 Feb; 18(1):39. PubMed ID: 28235418 [TBL] [Abstract][Full Text] [Related]
20. Novel method for analysis of allele specific expression in triploid Oryzias latipes reveals consistent pattern of allele exclusion. Garcia TI; Matos I; Shen Y; Pabuwal V; Coelho MM; Wakamatsu Y; Schartl M; Walter RB PLoS One; 2014; 9(6):e100250. PubMed ID: 24945156 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]