These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

291 related articles for article (PubMed ID: 33799479)

  • 1. Outcome of Different Sequencing and Assembly Approaches on the Detection of Plasmids and Localization of Antimicrobial Resistance Genes in Commensal
    Juraschek K; Borowiak M; Tausch SH; Malorny B; Käsbohrer A; Otani S; Schwarz S; Meemken D; Deneke C; Hammerl JA
    Microorganisms; 2021 Mar; 9(3):. PubMed ID: 33799479
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Three Distinct Annotation Platforms Differ in Detection of Antimicrobial Resistance Genes in Long-Read, Short-Read, and Hybrid Sequences Derived from Total Genomic DNA or from Purified Plasmid DNA.
    Maboni G; Baptista RP; Wireman J; Framst I; Summers AO; Sanchez S
    Antibiotics (Basel); 2022 Oct; 11(10):. PubMed ID: 36290058
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Complete hybrid genome assembly of clinical multidrug-resistant
    Sydenham TV; Overballe-Petersen S; Hasman H; Wexler H; Kemp M; Justesen US
    Microb Genom; 2019 Nov; 5(11):. PubMed ID: 31697231
    [No Abstract]   [Full Text] [Related]  

  • 4. Hybrid Assembly Provides Improved Resolution of Plasmids, Antimicrobial Resistance Genes, and Virulence Factors in
    Khezri A; Avershina E; Ahmad R
    Microorganisms; 2021 Dec; 9(12):. PubMed ID: 34946161
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Comparing antimicrobial resistant genes and phenotypes across multiple sequencing platforms and assays for Enterobacterales clinical isolates.
    Rose R; Nolan DJ; Ashcraft D; Feehan AK; Velez-Climent L; Huston C; Lain B; Rosenthal S; Miele L; Fogel GB; Pankey G; Garcia-Diaz J; Lamers SL
    BMC Microbiol; 2023 Aug; 23(1):225. PubMed ID: 37596530
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Benchmarking hybrid assembly approaches for genomic analyses of bacterial pathogens using Illumina and Oxford Nanopore sequencing.
    Chen Z; Erickson DL; Meng J
    BMC Genomics; 2020 Sep; 21(1):631. PubMed ID: 32928108
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Polishing the Oxford Nanopore long-read assemblies of bacterial pathogens with Illumina short reads to improve genomic analyses.
    Chen Z; Erickson DL; Meng J
    Genomics; 2021 May; 113(3):1366-1377. PubMed ID: 33716184
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes.
    De Maio N; Shaw LP; Hubbard A; George S; Sanderson ND; Swann J; Wick R; AbuOun M; Stubberfield E; Hoosdally SJ; Crook DW; Peto TEA; Sheppard AE; Bailey MJ; Read DS; Anjum MF; Walker AS; Stoesser N; On Behalf Of The Rehab Consortium
    Microb Genom; 2019 Sep; 5(9):. PubMed ID: 31483244
    [TBL] [Abstract][Full Text] [Related]  

  • 9. MinION nanopore sequencing identifies the position and structure of bacterial antibiotic resistance determinants in a multidrug-resistant strain of enteroaggregative Escherichia coli.
    Greig DR; Dallman TJ; Hopkins KL; Jenkins C
    Microb Genom; 2018 Oct; 4(10):. PubMed ID: 30235111
    [TBL] [Abstract][Full Text] [Related]  

  • 10. The
    Emond-Rheault JG; Hamel J; Jeukens J; Freschi L; Kukavica-Ibrulj I; Boyle B; Tamber S; Malo D; Franz E; Burnett E; Daigle F; Arya G; Sanderson K; Wiedmann M; Slawson RM; Weadge JT; Stephan R; Bekal S; Gruenheid S; Goodridge LD; Levesque RC
    Microorganisms; 2020 Jul; 8(7):. PubMed ID: 32650601
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Comparison of Reference-Based Assembly and De Novo Assembly for Bacterial Plasmid Reconstruction and AMR Gene Localization in
    Li IC; Yu GY; Huang JF; Chen ZW; Chou CH
    Microorganisms; 2022 Jan; 10(2):. PubMed ID: 35208682
    [TBL] [Abstract][Full Text] [Related]  

  • 12. The impact of applying various de novo assembly and correction tools on the identification of genome characterization, drug resistance, and virulence factors of clinical isolates using ONT sequencing.
    Safar HA; Alatar F; Nasser K; Al-Ajmi R; Alfouzan W; Mustafa AS
    BMC Biotechnol; 2023 Jul; 23(1):26. PubMed ID: 37525145
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Comparing Long-Read Assemblers to Explore the Potential of a Sustainable Low-Cost, Low-Infrastructure Approach to Sequence Antimicrobial Resistant Bacteria With Oxford Nanopore Sequencing.
    Boostrom I; Portal EAR; Spiller OB; Walsh TR; Sands K
    Front Microbiol; 2022; 13():796465. PubMed ID: 35308384
    [TBL] [Abstract][Full Text] [Related]  

  • 14. WeFaceNano: a user-friendly pipeline for complete ONT sequence assembly and detection of antibiotic resistance in multi-plasmid bacterial isolates.
    Heikema AP; Jansen R; Hiltemann SD; Hays JP; Stubbs AP
    BMC Microbiol; 2021 Jun; 21(1):171. PubMed ID: 34098864
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Development of an NGS-Based Workflow for Improved Monitoring of Circulating Plasmids in Support of Risk Assessment of Antimicrobial Resistance Gene Dissemination.
    Berbers B; Ceyssens PJ; Bogaerts P; Vanneste K; Roosens NHC; Marchal K; De Keersmaecker SCJ
    Antibiotics (Basel); 2020 Aug; 9(8):. PubMed ID: 32796589
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Nanopore-only assemblies for genomic surveillance of the global priority drug-resistant pathogen,
    Foster-Nyarko E; Cottingham H; Wick RR; Judd LM; Lam MMC; Wyres KL; Stanton TD; Tsang KK; David S; Aanensen DM; Brisse S; Holt KE
    Microb Genom; 2023 Feb; 9(2):. PubMed ID: 36752781
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Combining short and long read sequencing to characterize antimicrobial resistance genes on plasmids applied to an unauthorized genetically modified Bacillus.
    Berbers B; Saltykova A; Garcia-Graells C; Philipp P; Arella F; Marchal K; Winand R; Vanneste K; Roosens NHC; De Keersmaecker SCJ
    Sci Rep; 2020 Mar; 10(1):4310. PubMed ID: 32152350
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A Peek into the Plasmidome of Global Sewage.
    Kirstahler P; Teudt F; Otani S; Aarestrup FM; Pamp SJ
    mSystems; 2021 Jun; 6(3):e0028321. PubMed ID: 34061588
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Nanopore sequencing for fast determination of plasmids, phages, virulence markers, and antimicrobial resistance genes in Shiga toxin-producing Escherichia coli.
    González-Escalona N; Allard MA; Brown EW; Sharma S; Hoffmann M
    PLoS One; 2019; 14(7):e0220494. PubMed ID: 31361781
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Antimicrobial Resistance Profiling and Phylogenetic Analysis of
    Juma M; Sankaradoss A; Ndombi R; Mwaura P; Damodar T; Nazir J; Pandit A; Khurana R; Masika M; Chirchir R; Gachie J; Krishna S; Sowdhamini R; Anzala O; Meenakshi IS
    Front Microbiol; 2021; 12():647565. PubMed ID: 34385981
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 15.