252 related articles for article (PubMed ID: 33820988)
1. Discovering multiple types of DNA methylation from bacteria and microbiome using nanopore sequencing.
Tourancheau A; Mead EA; Zhang XS; Fang G
Nat Methods; 2021 May; 18(5):491-498. PubMed ID: 33820988
[TBL] [Abstract][Full Text] [Related]
2. Advancing metagenome-assembled genome-based pathogen identification: unraveling the power of long-read assembly algorithms in Oxford Nanopore sequencing.
Chen Z; Grim CJ; Ramachandran P; Meng J
Microbiol Spectr; 2024 Jun; 12(6):e0011724. PubMed ID: 38687063
[TBL] [Abstract][Full Text] [Related]
3. Metagenomic binning and association of plasmids with bacterial host genomes using DNA methylation.
Beaulaurier J; Zhu S; Deikus G; Mogno I; Zhang XS; Davis-Richardson A; Canepa R; Triplett EW; Faith JJ; Sebra R; Schadt EE; Fang G
Nat Biotechnol; 2018 Jan; 36(1):61-69. PubMed ID: 29227468
[TBL] [Abstract][Full Text] [Related]
4. Complete, closed bacterial genomes from microbiomes using nanopore sequencing.
Moss EL; Maghini DG; Bhatt AS
Nat Biotechnol; 2020 Jun; 38(6):701-707. PubMed ID: 32042169
[TBL] [Abstract][Full Text] [Related]
5. Freshwater monitoring by nanopore sequencing.
Urban L; Holzer A; Baronas JJ; Hall MB; Braeuninger-Weimer P; Scherm MJ; Kunz DJ; Perera SN; Martin-Herranz DE; Tipper ET; Salter SJ; Stammnitz MR
Elife; 2021 Jan; 10():. PubMed ID: 33461660
[TBL] [Abstract][Full Text] [Related]
6. mEnrich-seq: methylation-guided enrichment sequencing of bacterial taxa of interest from microbiome.
Cao L; Kong Y; Fan Y; Ni M; Tourancheau A; Ksiezarek M; Mead EA; Koo T; Gitman M; Zhang XS; Fang G
Nat Methods; 2024 Feb; 21(2):236-246. PubMed ID: 38177508
[TBL] [Abstract][Full Text] [Related]
7. BugSplit enables genome-resolved metagenomics through highly accurate taxonomic binning of metagenomic assemblies.
Chandrakumar I; Gauthier NPG; Nelson C; Bonsall MB; Locher K; Charles M; MacDonald C; Krajden M; Manges AR; Chorlton SD
Commun Biol; 2022 Feb; 5(1):151. PubMed ID: 35194141
[TBL] [Abstract][Full Text] [Related]
8. Evaluating
Vosloo S; Huo L; Anderson CL; Dai Z; Sevillano M; Pinto A
Microbiol Spectr; 2021 Dec; 9(3):e0143421. PubMed ID: 34730411
[TBL] [Abstract][Full Text] [Related]
9. Improved high-molecular-weight DNA extraction, nanopore sequencing and metagenomic assembly from the human gut microbiome.
Maghini DG; Moss EL; Vance SE; Bhatt AS
Nat Protoc; 2021 Jan; 16(1):458-471. PubMed ID: 33277629
[TBL] [Abstract][Full Text] [Related]
10. MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach.
Brown BL; Watson M; Minot SS; Rivera MC; Franklin RB
Gigascience; 2017 Mar; 6(3):1-10. PubMed ID: 28327976
[TBL] [Abstract][Full Text] [Related]
11. Strain-resolved microbiome sequencing reveals mobile elements that drive bacterial competition on a clinical timescale.
Zlitni S; Bishara A; Moss EL; Tkachenko E; Kang JB; Culver RN; Andermann TM; Weng Z; Wood C; Handy C; Ji HP; Batzoglou S; Bhatt AS
Genome Med; 2020 May; 12(1):50. PubMed ID: 32471482
[TBL] [Abstract][Full Text] [Related]
12. Identifying Bacterial Airways Infection in Stable Severe Asthma Using Oxford Nanopore Sequencing Technologies.
Jabeen MF; Sanderson ND; Foster D; Crook DW; Cane JL; Borg C; Connolly C; Thulborn S; Pavord ID; Klenerman P; Street TL; Hinks TSC
Microbiol Spectr; 2022 Apr; 10(2):e0227921. PubMed ID: 35323032
[TBL] [Abstract][Full Text] [Related]
13. cgMSI: pathogen detection within species from nanopore metagenomic sequencing data.
Zhu X; Zhao L; Huang L; Yang W; Wang L; Yu R
BMC Bioinformatics; 2023 Oct; 24(1):387. PubMed ID: 37821827
[TBL] [Abstract][Full Text] [Related]
14. Long-read metagenomics retrieves complete single-contig bacterial genomes from canine feces.
Cuscó A; Pérez D; Viñes J; Fàbregas N; Francino O
BMC Genomics; 2021 May; 22(1):330. PubMed ID: 33957869
[TBL] [Abstract][Full Text] [Related]
15. Targeted nanopore sequencing by real-time mapping of raw electrical signal with UNCALLED.
Kovaka S; Fan Y; Ni B; Timp W; Schatz MC
Nat Biotechnol; 2021 Apr; 39(4):431-441. PubMed ID: 33257863
[TBL] [Abstract][Full Text] [Related]
16. metaMIC: reference-free misassembly identification and correction of de novo metagenomic assemblies.
Lai S; Pan S; Sun C; Coelho LP; Chen WH; Zhao XM
Genome Biol; 2022 Nov; 23(1):242. PubMed ID: 36376928
[TBL] [Abstract][Full Text] [Related]
17. Spatial metagenomic characterization of microbial biogeography in the gut.
Sheth RU; Li M; Jiang W; Sims PA; Leong KW; Wang HH
Nat Biotechnol; 2019 Aug; 37(8):877-883. PubMed ID: 31332325
[TBL] [Abstract][Full Text] [Related]
18. Using Nanopore Sequencing to Obtain Complete Bacterial Genomes from Saliva Samples.
Baker JL
mSystems; 2022 Oct; 7(5):e0049122. PubMed ID: 35993719
[TBL] [Abstract][Full Text] [Related]
19. A new metagenome binning method based on gene uniqueness.
Kang Y; Wan C; Lu S; Fu Z; Chen AK; Lu Z
Genes Genomics; 2020 Aug; 42(8):883-892. PubMed ID: 32506266
[TBL] [Abstract][Full Text] [Related]
20. Expanded catalog of microbial genes and metagenome-assembled genomes from the pig gut microbiome.
Chen C; Zhou Y; Fu H; Xiong X; Fang S; Jiang H; Wu J; Yang H; Gao J; Huang L
Nat Commun; 2021 Feb; 12(1):1106. PubMed ID: 33597514
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]