These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

158 related articles for article (PubMed ID: 33832234)

  • 1. Reweighting non-equilibrium steady-state dynamics along collective variables.
    Bause M; Bereau T
    J Chem Phys; 2021 Apr; 154(13):134105. PubMed ID: 33832234
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Microscopic reweighting for nonequilibrium steady-state dynamics.
    Bause M; Wittenstein T; Kremer K; Bereau T
    Phys Rev E; 2019 Dec; 100(6-1):060103. PubMed ID: 31962494
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Temperature-Accelerated Sampling and Amplified Collective Motion with Adiabatic Reweighting to Obtain Canonical Distributions and Ensemble Averages.
    Hu Y; Hong W; Shi Y; Liu H
    J Chem Theory Comput; 2012 Oct; 8(10):3777-92. PubMed ID: 26593019
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Dynamical Reweighting for Biased Rare Event Simulations.
    Keller BG; Bolhuis PG
    Annu Rev Phys Chem; 2024 Jun; 75(1):137-162. PubMed ID: 38941527
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Maximum caliber inference of nonequilibrium processes.
    Otten M; Stock G
    J Chem Phys; 2010 Jul; 133(3):034119. PubMed ID: 20649320
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Reweighted Manifold Learning of Collective Variables from Enhanced Sampling Simulations.
    Rydzewski J; Chen M; Ghosh TK; Valsson O
    J Chem Theory Comput; 2022 Dec; 18(12):7179-7192. PubMed ID: 36367826
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Perspective: Maximum caliber is a general variational principle for dynamical systems.
    Dixit PD; Wagoner J; Weistuch C; Pressé S; Ghosh K; Dill KA
    J Chem Phys; 2018 Jan; 148(1):010901. PubMed ID: 29306272
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Girsanov Reweighting Enhanced Sampling Technique (GREST): On-the-Fly Data-Driven Discovery of and Enhanced Sampling in Slow Collective Variables.
    Shmilovich K; Ferguson AL
    J Phys Chem A; 2023 Apr; 127(15):3497-3517. PubMed ID: 37036804
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Maximum Caliber: a variational approach applied to two-state dynamics.
    Stock G; Ghosh K; Dill KA
    J Chem Phys; 2008 May; 128(19):194102. PubMed ID: 18500851
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A targeted reweighting method for accelerating the exploration of high-dimensional configuration space.
    Cukier RI; Morillo M
    J Chem Phys; 2005 Dec; 123(23):234908. PubMed ID: 16392950
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Molecular Latent Space Simulators for Distributed and Multimolecular Trajectories.
    Jones MS; McDargh ZA; Wiewiora RP; Izaguirre JA; Xu H; Ferguson AL
    J Phys Chem A; 2023 Jun; 127(25):5470-5490. PubMed ID: 37314375
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Girsanov reweighting for metadynamics simulations.
    Donati L; Keller BG
    J Chem Phys; 2018 Aug; 149(7):072335. PubMed ID: 30134671
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Stochastic thermodynamics in a non-Markovian dynamical system.
    Cockrell C; Ford IJ
    Phys Rev E; 2022 Jun; 105(6-1):064124. PubMed ID: 35854505
    [TBL] [Abstract][Full Text] [Related]  

  • 14. The Adaptive Path Collective Variable: A Versatile Biasing Approach to Compute the Average Transition Path and Free Energy of Molecular Transitions.
    Pérez de Alba Ortíz A; Vreede J; Ensing B
    Methods Mol Biol; 2019; 2022():255-290. PubMed ID: 31396907
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Optimizing molecular potential models by imposing kinetic constraints with path reweighting.
    Bolhuis PG; Brotzakis ZF; Keller BG
    J Chem Phys; 2023 Aug; 159(7):. PubMed ID: 37581416
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Mean first passage times in variational coarse graining using Markov state models.
    Kells A; Mihálka ZÉ; Annibale A; Rosta E
    J Chem Phys; 2019 Apr; 150(13):134107. PubMed ID: 30954057
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Computing the non-Markovian coarse-grained interactions derived from the Mori-Zwanzig formalism in molecular systems: Application to polymer melts.
    Li Z; Lee HS; Darve E; Karniadakis GE
    J Chem Phys; 2017 Jan; 146(1):014104. PubMed ID: 28063444
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Dimensionality of Collective Variables for Describing Conformational Changes of a Multi-Domain Protein.
    Matsunaga Y; Komuro Y; Kobayashi C; Jung J; Mori T; Sugita Y
    J Phys Chem Lett; 2016 Apr; 7(8):1446-51. PubMed ID: 27049936
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Building maps in collective variable space.
    Gimondi I; Tribello GA; Salvalaglio M
    J Chem Phys; 2018 Sep; 149(10):104104. PubMed ID: 30219018
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Potential-based dynamical reweighting for Markov state models of protein dynamics.
    Weber JK; Pande VS
    J Chem Theory Comput; 2015 Jun; 11(6):2412-20. PubMed ID: 26575541
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.