BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

112 related articles for article (PubMed ID: 33835434)

  • 1. Advanced Design of Structural RNAs Using RNARedPrint.
    Ponty Y; Hammer S; Yao HT; Will S
    Methods Mol Biol; 2021; 2284():1-15. PubMed ID: 33835434
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Partial RNA design.
    Runge F; Franke J; Fertmann D; Backofen R; Hutter F
    Bioinformatics; 2024 Jun; 40(Supplement_1):i437-i445. PubMed ID: 38940170
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Fixed-parameter tractable sampling for RNA design with multiple target structures.
    Hammer S; Wang W; Will S; Ponty Y
    BMC Bioinformatics; 2019 Apr; 20(1):209. PubMed ID: 31023239
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Secondary structural entropy in RNA switch (Riboswitch) identification.
    Manzourolajdad A; Arnold J
    BMC Bioinformatics; 2015 Apr; 16():133. PubMed ID: 25928324
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A weighted sampling algorithm for the design of RNA sequences with targeted secondary structure and nucleotide distribution.
    Reinharz V; Ponty Y; Waldispühl J
    Bioinformatics; 2013 Jul; 29(13):i308-15. PubMed ID: 23812999
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Automated Design of Diverse Stand-Alone Riboswitches.
    Wu MJ; Andreasson JOL; Kladwang W; Greenleaf W; Das R
    ACS Synth Biol; 2019 Aug; 8(8):1838-1846. PubMed ID: 31298841
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Finding stable local optimal RNA secondary structures.
    Li Y; Zhang S
    Bioinformatics; 2011 Nov; 27(21):2994-3001. PubMed ID: 21903624
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Applications and limitations of regulatory RNA elements in synthetic biology and biotechnology.
    Nshogozabahizi JC; Aubrey KL; Ross JA; Thakor N
    J Appl Microbiol; 2019 Oct; 127(4):968-984. PubMed ID: 30927378
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Computer-Aided Design of Active Pseudoknotted Hammerhead Ribozymes.
    Najeh S; Zandi K; Djerroud S; Kharma N; Perreault J
    Methods Mol Biol; 2021; 2167():91-111. PubMed ID: 32712917
    [TBL] [Abstract][Full Text] [Related]  

  • 10. MoiRNAiFold: a novel tool for complex in silico RNA design.
    Minuesa G; Alsina C; Garcia-Martin JA; Oliveros JC; Dotu I
    Nucleic Acids Res; 2021 May; 49(9):4934-4943. PubMed ID: 33956139
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Computational design of RNAs with complex energy landscapes.
    Höner zu Siederdissen C; Hammer S; Abfalter I; Hofacker IL; Flamm C; Stadler PF
    Biopolymers; 2013 Dec; 99(12):1124-36. PubMed ID: 23818234
    [TBL] [Abstract][Full Text] [Related]  

  • 12. In silico design and enzymatic synthesis of functional RNA nanoparticles.
    Afonin KA; Kasprzak WK; Bindewald E; Kireeva M; Viard M; Kashlev M; Shapiro BA
    Acc Chem Res; 2014 Jun; 47(6):1731-41. PubMed ID: 24758371
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Design of transcription regulating riboswitches.
    Findeiß S; Wachsmuth M; Mörl M; Stadler PF
    Methods Enzymol; 2015; 550():1-22. PubMed ID: 25605378
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A global sampling approach to designing and reengineering RNA secondary structures.
    Levin A; Lis M; Ponty Y; O'Donnell CW; Devadas S; Berger B; Waldispühl J
    Nucleic Acids Res; 2012 Nov; 40(20):10041-52. PubMed ID: 22941632
    [TBL] [Abstract][Full Text] [Related]  

  • 15. INFO-RNA--a server for fast inverse RNA folding satisfying sequence constraints.
    Busch A; Backofen R
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W310-3. PubMed ID: 17452349
    [TBL] [Abstract][Full Text] [Related]  

  • 16. RNAiFOLD: a constraint programming algorithm for RNA inverse folding and molecular design.
    Garcia-Martin JA; Clote P; Dotu I
    J Bioinform Comput Biol; 2013 Apr; 11(2):1350001. PubMed ID: 23600819
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Synthetic small RNAs: Current status, challenges, and opportunities.
    Patel S; Panchasara H; Braddick D; Gohil N; Singh V
    J Cell Biochem; 2018 Dec; 119(12):9619-9639. PubMed ID: 30010218
    [TBL] [Abstract][Full Text] [Related]  

  • 18. incaRNAfbinv: a web server for the fragment-based design of RNA sequences.
    Drory Retwitzer M; Reinharz V; Ponty Y; Waldispühl J; Barash D
    Nucleic Acids Res; 2016 Jul; 44(W1):W308-14. PubMed ID: 27185893
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Automated 3D RNA structure prediction using the RNAComposer method for riboswitches.
    Purzycka KJ; Popenda M; Szachniuk M; Antczak M; Lukasiak P; Blazewicz J; Adamiak RW
    Methods Enzymol; 2015; 553():3-34. PubMed ID: 25726459
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Synthesis of spin-labeled riboswitch RNAs using convertible nucleosides and DNA-catalyzed RNA ligation.
    Büttner L; Seikowski J; Wawrzyniak K; Ochmann A; Höbartner C
    Bioorg Med Chem; 2013 Oct; 21(20):6171-80. PubMed ID: 23664496
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.