188 related articles for article (PubMed ID: 33844023)
1. Species Tree Estimation from Gene Trees by Minimizing Deep Coalescence and Maximizing Quartet Consistency: A Comparative Study and the Presence of Pseudo Species Tree Terraces.
Farah IT; Islam M; Zinat KT; Rahman AH; Bayzid S
Syst Biol; 2021 Oct; 70(6):1213-1231. PubMed ID: 33844023
[TBL] [Abstract][Full Text] [Related]
2. Consistency properties of species tree inference by minimizing deep coalescences.
Than CV; Rosenberg NA
J Comput Biol; 2011 Jan; 18(1):1-15. PubMed ID: 21210728
[TBL] [Abstract][Full Text] [Related]
3. A comparative study of SVDquartets and other coalescent-based species tree estimation methods.
Chou J; Gupta A; Yaduvanshi S; Davidson R; Nute M; Mirarab S; Warnow T
BMC Genomics; 2015; 16 Suppl 10(Suppl 10):S2. PubMed ID: 26449249
[TBL] [Abstract][Full Text] [Related]
4. SVDquest: Improving SVDquartets species tree estimation using exact optimization within a constrained search space.
Vachaspati P; Warnow T
Mol Phylogenet Evol; 2018 Jul; 124():122-136. PubMed ID: 29530498
[TBL] [Abstract][Full Text] [Related]
5. To Include or Not to Include: The Impact of Gene Filtering on Species Tree Estimation Methods.
Molloy EK; Warnow T
Syst Biol; 2018 Mar; 67(2):285-303. PubMed ID: 29029338
[TBL] [Abstract][Full Text] [Related]
6. Quartet Based Gene Tree Imputation Using Deep Learning Improves Phylogenomic Analyses Despite Missing Data.
Mahbub S; Sawmya S; Saha A; Reaz R; Rahman MS; Bayzid MS
J Comput Biol; 2022 Nov; 29(11):1156-1172. PubMed ID: 36048555
[TBL] [Abstract][Full Text] [Related]
7. Phylogenomic species tree estimation in the presence of incomplete lineage sorting and horizontal gene transfer.
Davidson R; Vachaspati P; Mirarab S; Warnow T
BMC Genomics; 2015; 16 Suppl 10(Suppl 10):S1. PubMed ID: 26450506
[TBL] [Abstract][Full Text] [Related]
8. Species tree inference by minimizing deep coalescences.
Than C; Nakhleh L
PLoS Comput Biol; 2009 Sep; 5(9):e1000501. PubMed ID: 19749978
[TBL] [Abstract][Full Text] [Related]
9. Estimating optimal species trees from incomplete gene trees under deep coalescence.
Bayzid MS; Warnow T
J Comput Biol; 2012 Jun; 19(6):591-605. PubMed ID: 22697236
[TBL] [Abstract][Full Text] [Related]
10. Algorithms for MDC-based multi-locus phylogeny inference: beyond rooted binary gene trees on single alleles.
Yu Y; Warnow T; Nakhleh L
J Comput Biol; 2011 Nov; 18(11):1543-59. PubMed ID: 22035329
[TBL] [Abstract][Full Text] [Related]
11. STELAR: a statistically consistent coalescent-based species tree estimation method by maximizing triplet consistency.
Islam M; Sarker K; Das T; Reaz R; Bayzid MS
BMC Genomics; 2020 Feb; 21(1):136. PubMed ID: 32039704
[TBL] [Abstract][Full Text] [Related]
12. Theoretical and Practical Considerations when using Retroelement Insertions to Estimate Species Trees in the Anomaly Zone.
Molloy EK; Gatesy J; Springer MS
Syst Biol; 2022 Apr; 71(3):721-740. PubMed ID: 34677617
[TBL] [Abstract][Full Text] [Related]
13. wQFM: highly accurate genome-scale species tree estimation from weighted quartets.
Mahbub M; Wahab Z; Reaz R; Rahman MS; Bayzid MS
Bioinformatics; 2021 Nov; 37(21):3734-3743. PubMed ID: 34086858
[TBL] [Abstract][Full Text] [Related]
14. Maximum likelihood estimates of species trees: how accuracy of phylogenetic inference depends upon the divergence history and sampling design.
McCormack JE; Huang H; Knowles LL
Syst Biol; 2009 Oct; 58(5):501-8. PubMed ID: 20525604
[TBL] [Abstract][Full Text] [Related]
15. Improving quartet graph construction for scalable and accurate species tree estimation from gene trees.
Han Y; Molloy EK
Genome Res; 2023 Jul; 33(7):1042-1052. PubMed ID: 37197990
[TBL] [Abstract][Full Text] [Related]
16. Evaluating Summary Methods for Multilocus Species Tree Estimation in the Presence of Incomplete Lineage Sorting.
Mirarab S; Bayzid MS; Warnow T
Syst Biol; 2016 May; 65(3):366-80. PubMed ID: 25164915
[TBL] [Abstract][Full Text] [Related]
17. Statistical inconsistency of the unrooted minimize deep coalescence criterion.
Alanzi AAR; Degnan JH
PLoS One; 2021; 16(5):e0251107. PubMed ID: 33970931
[TBL] [Abstract][Full Text] [Related]
18. Estimating species phylogeny from gene-tree probabilities despite incomplete lineage sorting: an example from Melanoplus grasshoppers.
Carstens BC; Knowles LL
Syst Biol; 2007 Jun; 56(3):400-11. PubMed ID: 17520504
[TBL] [Abstract][Full Text] [Related]
19. A matter of phylogenetic scale: Distinguishing incomplete lineage sorting from lateral gene transfer as the cause of gene tree discord in recent versus deep diversification histories.
Knowles LL; Huang H; Sukumaran J; Smith SA
Am J Bot; 2018 Mar; 105(3):376-384. PubMed ID: 29710372
[TBL] [Abstract][Full Text] [Related]
20. The influence of gene flow on species tree estimation: a simulation study.
Leaché AD; Harris RB; Rannala B; Yang Z
Syst Biol; 2014 Jan; 63(1):17-30. PubMed ID: 23945075
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
