182 related articles for article (PubMed ID: 33871257)
1. Exploring Energy Landscapes of Intrinsically Disordered Proteins: Insights into Functional Mechanisms.
Oliveira Junior AB; Lin X; Kulkarni P; Onuchic JN; Roy S; Leite VBP
J Chem Theory Comput; 2021 May; 17(5):3178-3187. PubMed ID: 33871257
[TBL] [Abstract][Full Text] [Related]
2. Phosphorylation-induced conformational dynamics in an intrinsically disordered protein and potential role in phenotypic heterogeneity.
Kulkarni P; Jolly MK; Jia D; Mooney SM; Bhargava A; Kagohara LT; Chen Y; Hao P; He Y; Veltri RW; Grishaev A; Weninger K; Levine H; Orban J
Proc Natl Acad Sci U S A; 2017 Mar; 114(13):E2644-E2653. PubMed ID: 28289210
[TBL] [Abstract][Full Text] [Related]
3. Structural and Dynamical Order of a Disordered Protein: Molecular Insights into Conformational Switching of PAGE4 at the Systems Level.
Lin X; Kulkarni P; Bocci F; Schafer NP; Roy S; Tsai MY; He Y; Chen Y; Rajagopalan K; Mooney SM; Zeng Y; Weninger K; Grishaev A; Onuchic JN; Levine H; Wolynes PG; Salgia R; Rangarajan G; Uversky V; Orban J; Jolly MK
Biomolecules; 2019 Feb; 9(2):. PubMed ID: 30813315
[TBL] [Abstract][Full Text] [Related]
4. PAGE4 and Conformational Switching: Insights from Molecular Dynamics Simulations and Implications for Prostate Cancer.
Lin X; Roy S; Jolly MK; Bocci F; Schafer NP; Tsai MY; Chen Y; He Y; Grishaev A; Weninger K; Orban J; Kulkarni P; Rangarajan G; Levine H; Onuchic JN
J Mol Biol; 2018 Aug; 430(16):2422-2438. PubMed ID: 29758263
[TBL] [Abstract][Full Text] [Related]
5. Prostate-associated gene 4 (PAGE4), an intrinsically disordered cancer/testis antigen, is a novel therapeutic target for prostate cancer.
Kulkarni P; Dunker AK; Weninger K; Orban J
Asian J Androl; 2016; 18(5):695-703. PubMed ID: 27270343
[TBL] [Abstract][Full Text] [Related]
6. Cancer/testis antigen PAGE4, a regulator of c-Jun transactivation, is phosphorylated by homeodomain-interacting protein kinase 1, a component of the stress-response pathway.
Mooney SM; Qiu R; Kim JJ; Sacho EJ; Rajagopalan K; Johng D; Shiraishi T; Kulkarni P; Weninger KR
Biochemistry; 2014 Mar; 53(10):1670-9. PubMed ID: 24559171
[TBL] [Abstract][Full Text] [Related]
7. Phosphorylation-induced Conformational Ensemble Switching in an Intrinsically Disordered Cancer/Testis Antigen.
He Y; Chen Y; Mooney SM; Rajagopalan K; Bhargava A; Sacho E; Weninger K; Bryan PN; Kulkarni P; Orban J
J Biol Chem; 2015 Oct; 290(41):25090-102. PubMed ID: 26242913
[TBL] [Abstract][Full Text] [Related]
8. The Stress-response protein prostate-associated gene 4, interacts with c-Jun and potentiates its transactivation.
Rajagopalan K; Qiu R; Mooney SM; Rao S; Shiraishi T; Sacho E; Huang H; Shapiro E; Weninger KR; Kulkarni P
Biochim Biophys Acta; 2014 Feb; 1842(2):154-63. PubMed ID: 24263171
[TBL] [Abstract][Full Text] [Related]
9. Understanding the Energy Landscape of Intrinsically Disordered Protein Ensembles.
Viegas RG; Martins IBS; Leite VBP
J Chem Inf Model; 2024 May; 64(10):4149-4157. PubMed ID: 38713459
[TBL] [Abstract][Full Text] [Related]
10. Examining the Ensembles of Amyloid-β Monomer Variants and Their Propensities to Form Fibers Using an Energy Landscape Visualization Method.
Sanches MN; Knapp K; Oliveira AB; Wolynes PG; Onuchic JN; Leite VBP
J Phys Chem B; 2022 Jan; 126(1):93-99. PubMed ID: 34968059
[TBL] [Abstract][Full Text] [Related]
11. Single Molecule FRET: A Powerful Tool to Study Intrinsically Disordered Proteins.
LeBlanc SJ; Kulkarni P; Weninger KR
Biomolecules; 2018 Nov; 8(4):. PubMed ID: 30413085
[TBL] [Abstract][Full Text] [Related]
12. Conformational propensities of intrinsically disordered proteins influence the mechanism of binding and folding.
Arai M; Sugase K; Dyson HJ; Wright PE
Proc Natl Acad Sci U S A; 2015 Aug; 112(31):9614-9. PubMed ID: 26195786
[TBL] [Abstract][Full Text] [Related]
13. A J-modulated protonless NMR experiment characterizes the conformational ensemble of the intrinsically disordered protein WIP.
Rozentur-Shkop E; Goobes G; Chill JH
J Biomol NMR; 2016 Dec; 66(4):243-257. PubMed ID: 27844185
[TBL] [Abstract][Full Text] [Related]
14. Deducing the functional characteristics of the human selenoprotein SELK from the structural properties of its intrinsically disordered C-terminal domain.
Polo A; Colonna G; Guariniello S; Ciliberto G; Costantini S
Mol Biosyst; 2016 Mar; 12(3):758-72. PubMed ID: 26735936
[TBL] [Abstract][Full Text] [Related]
15. Spontaneous Switching among Conformational Ensembles in Intrinsically Disordered Proteins.
Choi UB; Sanabria H; Smirnova T; Bowen ME; Weninger KR
Biomolecules; 2019 Mar; 9(3):. PubMed ID: 30909517
[TBL] [Abstract][Full Text] [Related]
16. Intrinsically Disordered Protein Ensembles Shape Evolutionary Rates Revealing Conformational Patterns.
Palopoli N; Marchetti J; Monzon AM; Zea DJ; Tosatto SCE; Fornasari MS; Parisi G
J Mol Biol; 2021 Feb; 433(3):166751. PubMed ID: 33310020
[TBL] [Abstract][Full Text] [Related]
17. Quantifying Protein Disorder through Measures of Excess Conformational Entropy.
Rajasekaran N; Gopi S; Narayan A; Naganathan AN
J Phys Chem B; 2016 May; 120(19):4341-50. PubMed ID: 27111521
[TBL] [Abstract][Full Text] [Related]
18. A Method for Determining Structure Ensemble of Large Disordered Protein: Application to a Mechanosensing Protein.
Liu W; Liu X; Zhu G; Lu L; Yang D
J Am Chem Soc; 2018 Sep; 140(36):11276-11285. PubMed ID: 30124042
[TBL] [Abstract][Full Text] [Related]
19. General Purpose Water Model Can Improve Atomistic Simulations of Intrinsically Disordered Proteins.
Shabane PS; Izadi S; Onufriev AV
J Chem Theory Comput; 2019 Apr; 15(4):2620-2634. PubMed ID: 30865832
[TBL] [Abstract][Full Text] [Related]
20. Ensemble Calculation for Intrinsically Disordered Proteins Using NMR Parameters.
Kragelj J; Blackledge M; Jensen MR
Adv Exp Med Biol; 2015; 870():123-47. PubMed ID: 26387101
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
