154 related articles for article (PubMed ID: 33872372)
1. miRMaster 2.0: multi-species non-coding RNA sequencing analyses at scale.
Fehlmann T; Kern F; Laham O; Backes C; Solomon J; Hirsch P; Volz C; Müller R; Keller A
Nucleic Acids Res; 2021 Jul; 49(W1):W397-W408. PubMed ID: 33872372
[TBL] [Abstract][Full Text] [Related]
2. SPORTS1.0: A Tool for Annotating and Profiling Non-coding RNAs Optimized for rRNA- and tRNA-derived Small RNAs.
Shi J; Ko EA; Sanders KM; Chen Q; Zhou T
Genomics Proteomics Bioinformatics; 2018 Apr; 16(2):144-151. PubMed ID: 29730207
[TBL] [Abstract][Full Text] [Related]
3. miRSwitch: detecting microRNA arm shift and switch events.
Kern F; Amand J; Senatorov I; Isakova A; Backes C; Meese E; Keller A; Fehlmann T
Nucleic Acids Res; 2020 Jul; 48(W1):W268-W274. PubMed ID: 32356893
[TBL] [Abstract][Full Text] [Related]
4. miEAA 2.0: integrating multi-species microRNA enrichment analysis and workflow management systems.
Kern F; Fehlmann T; Solomon J; Schwed L; Grammes N; Backes C; Van Keuren-Jensen K; Craig DW; Meese E; Keller A
Nucleic Acids Res; 2020 Jul; 48(W1):W521-W528. PubMed ID: 32374865
[TBL] [Abstract][Full Text] [Related]
5. miEAA 2023: updates, new functional microRNA sets and improved enrichment visualizations.
Aparicio-Puerta E; Hirsch P; Schmartz GP; Kern F; Fehlmann T; Keller A
Nucleic Acids Res; 2023 Jul; 51(W1):W319-W325. PubMed ID: 37177999
[TBL] [Abstract][Full Text] [Related]
6. Web-based NGS data analysis using miRMaster: a large-scale meta-analysis of human miRNAs.
Fehlmann T; Backes C; Kahraman M; Haas J; Ludwig N; Posch AE; Würstle ML; Hübenthal M; Franke A; Meder B; Meese E; Keller A
Nucleic Acids Res; 2017 Sep; 45(15):8731-8744. PubMed ID: 28911107
[TBL] [Abstract][Full Text] [Related]
7. ISRNA: an integrative online toolkit for short reads from high-throughput sequencing data.
Luo GZ; Yang W; Ma YK; Wang XJ
Bioinformatics; 2014 Feb; 30(3):434-6. PubMed ID: 24300438
[TBL] [Abstract][Full Text] [Related]
8. mmannot: How to improve small-RNA annotation?
Zytnicki M; Gaspin C
PLoS One; 2020; 15(5):e0231738. PubMed ID: 32463818
[TBL] [Abstract][Full Text] [Related]
9. Hybridization-based reconstruction of small non-coding RNA transcripts from deep sequencing data.
Ragan C; Mowry BJ; Bauer DC
Nucleic Acids Res; 2012 Sep; 40(16):7633-43. PubMed ID: 22705792
[TBL] [Abstract][Full Text] [Related]
10. miEAA: microRNA enrichment analysis and annotation.
Backes C; Khaleeq QT; Meese E; Keller A
Nucleic Acids Res; 2016 Jul; 44(W1):W110-6. PubMed ID: 27131362
[TBL] [Abstract][Full Text] [Related]
11. Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API.
Desvignes T; Loher P; Eilbeck K; Ma J; Urgese G; Fromm B; Sydes J; Aparicio-Puerta E; Barrera V; Espín R; Thibord F; Bofill-De Ros X; Londin E; Telonis AG; Ficarra E; Friedländer MR; Postlethwait JH; Rigoutsos I; Hackenberg M; Vlachos IS; Halushka MK; Pantano L
Bioinformatics; 2020 Feb; 36(3):698-703. PubMed ID: 31504201
[TBL] [Abstract][Full Text] [Related]
12. FlaiMapper: computational annotation of small ncRNA-derived fragments using RNA-seq high-throughput data.
Hoogstrate Y; Jenster G; Martens-Uzunova ES
Bioinformatics; 2015 Mar; 31(5):665-73. PubMed ID: 25338717
[TBL] [Abstract][Full Text] [Related]
13. sRNAnalyzer-a flexible and customizable small RNA sequencing data analysis pipeline.
Wu X; Kim TK; Baxter D; Scherler K; Gordon A; Fong O; Etheridge A; Galas DJ; Wang K
Nucleic Acids Res; 2017 Dec; 45(21):12140-12151. PubMed ID: 29069500
[TBL] [Abstract][Full Text] [Related]
14. shortran: a pipeline for small RNA-seq data analysis.
Gupta V; Markmann K; Pedersen CN; Stougaard J; Andersen SU
Bioinformatics; 2012 Oct; 28(20):2698-700. PubMed ID: 22914220
[TBL] [Abstract][Full Text] [Related]
15. YM500v3: a database for small RNA sequencing in human cancer research.
Chung IF; Chang SJ; Chen CY; Liu SH; Li CY; Chan CH; Shih CC; Cheng WC
Nucleic Acids Res; 2017 Jan; 45(D1):D925-D931. PubMed ID: 27899625
[TBL] [Abstract][Full Text] [Related]
16. SPAR: small RNA-seq portal for analysis of sequencing experiments.
Kuksa PP; Amlie-Wolf A; Katanic Ž; Valladares O; Wang LS; Leung YY
Nucleic Acids Res; 2018 Jul; 46(W1):W36-W42. PubMed ID: 29733404
[TBL] [Abstract][Full Text] [Related]
17. Oasis 2: improved online analysis of small RNA-seq data.
Rahman RU; Gautam A; Bethune J; Sattar A; Fiosins M; Magruder DS; Capece V; Shomroni O; Bonn S
BMC Bioinformatics; 2018 Feb; 19(1):54. PubMed ID: 29444641
[TBL] [Abstract][Full Text] [Related]
18. miFRame: analysis and visualization of miRNA sequencing data in neurological disorders.
Backes C; Haas J; Leidinger P; Frese K; Großmann T; Ruprecht K; Meder B; Meese E; Keller A
J Transl Med; 2015 Jul; 13():224. PubMed ID: 26169944
[TBL] [Abstract][Full Text] [Related]
19. A non-biased framework for the annotation and classification of the non-miRNA small RNA transcriptome.
Pantano L; Estivill X; Martí E
Bioinformatics; 2011 Nov; 27(22):3202-3. PubMed ID: 21976421
[TBL] [Abstract][Full Text] [Related]
20. miRA: adaptable novel miRNA identification in plants using small RNA sequencing data.
Evers M; Huttner M; Dueck A; Meister G; Engelmann JC
BMC Bioinformatics; 2015 Nov; 16():370. PubMed ID: 26542525
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]