BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

521 related articles for article (PubMed ID: 33875001)

  • 1. Profiling SARS-CoV-2 mutation fingerprints that range from the viral pangenome to individual infection quasispecies.
    Lau BT; Pavlichin D; Hooker AC; Almeda A; Shin G; Chen J; Sahoo MK; Huang CH; Pinsky BA; Lee HJ; Ji HP
    Genome Med; 2021 Apr; 13(1):62. PubMed ID: 33875001
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Profiling SARS-CoV-2 mutation fingerprints that range from the viral pangenome to individual infection quasispecies.
    Lau BT; Pavlichin D; Hooker AC; Almeda A; Shin G; Chen J; Sahoo MK; Huang C; Pinsky BA; Lee H; Ji HP
    medRxiv; 2020 Nov; ():. PubMed ID: 33173909
    [TBL] [Abstract][Full Text] [Related]  

  • 3. SARS-CoV-2 Quasispecies Provides an Advantage Mutation Pool for the Epidemic Variants.
    Sun F; Wang X; Tan S; Dan Y; Lu Y; Zhang J; Xu J; Tan Z; Xiang X; Zhou Y; He W; Wan X; Zhang W; Chen Y; Tan W; Deng G
    Microbiol Spectr; 2021 Sep; 9(1):e0026121. PubMed ID: 34346744
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Patterns of within-host genetic diversity in SARS-CoV-2.
    Tonkin-Hill G; Martincorena I; Amato R; Lawson ARJ; Gerstung M; Johnston I; Jackson DK; Park N; Lensing SV; Quail MA; Gonçalves S; Ariani C; Spencer Chapman M; Hamilton WL; Meredith LW; Hall G; Jahun AS; Chaudhry Y; Hosmillo M; Pinckert ML; Georgana I; Yakovleva A; Caller LG; Caddy SL; Feltwell T; Khokhar FA; Houldcroft CJ; Curran MD; Parmar S; ; Alderton A; Nelson R; Harrison EM; Sillitoe J; Bentley SD; Barrett JC; Torok ME; Goodfellow IG; Langford C; Kwiatkowski D;
    Elife; 2021 Aug; 10():. PubMed ID: 34387545
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Choice of assemblers has a critical impact on de novo assembly of SARS-CoV-2 genome and characterizing variants.
    Islam R; Raju RS; Tasnim N; Shihab IH; Bhuiyan MA; Araf Y; Islam T
    Brief Bioinform; 2021 Sep; 22(5):. PubMed ID: 33822878
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Quasispecies of SARS-CoV-2 revealed by single nucleotide polymorphisms (SNPs) analysis.
    Gao R; Zu W; Liu Y; Li J; Li Z; Wen Y; Wang H; Yuan J; Cheng L; Zhang S; Zhang Y; Zhang S; Liu W; Lan X; Liu L; Li F; Zhang Z
    Virulence; 2021 Dec; 12(1):1209-1226. PubMed ID: 34030593
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Single-nucleotide conservation state annotation of the SARS-CoV-2 genome.
    Kwon SB; Ernst J
    Commun Biol; 2021 Jun; 4(1):698. PubMed ID: 34083758
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Host-dependent editing of SARS-CoV-2 in COVID-19 patients.
    Gregori J; Cortese MF; Piñana M; Campos C; Garcia-Cehic D; Andrés C; Abril JF; Codina MG; Rando A; Esperalba J; Sulleiro E; Joseph J; Saubí N; Colomer-Castell S; Martin MC; Castillo C; Esteban JI; Pumarola T; Rodriguez-Frias F; Antón A; Quer J
    Emerg Microbes Infect; 2021 Dec; 10(1):1777-1789. PubMed ID: 34402744
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Improved SARS-CoV-2 sequencing surveillance allows the identification of new variants and signatures in infected patients.
    Grimaldi A; Panariello F; Annunziata P; Giuliano T; Daniele M; Pierri B; Colantuono C; Salvi M; Bouché V; Manfredi A; Cuomo MC; Di Concilio D; Tiberio C; Fiorenza M; Portella G; Cimmino I; Sorrentino A; Fusco G; Granata MR; Cerino P; Limone A; Atripaldi L; Ballabio A; Cacchiarelli D
    Genome Med; 2022 Aug; 14(1):90. PubMed ID: 35962405
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Intra-Host Diversity of SARS-Cov-2 Should Not Be Neglected: Case of the State of Victoria, Australia.
    Armero A; Berthet N; Avarre JC
    Viruses; 2021 Jan; 13(1):. PubMed ID: 33477885
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Emergence of novel SARS-CoV-2 variants in the Netherlands.
    Urhan A; Abeel T
    Sci Rep; 2021 Mar; 11(1):6625. PubMed ID: 33758205
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Whole genome analysis of more than 10 000 SARS-CoV-2 virus unveils global genetic diversity and target region of NSP6.
    Saha I; Ghosh N; Pradhan A; Sharma N; Maity D; Mitra K
    Brief Bioinform; 2021 Mar; 22(2):1106-1121. PubMed ID: 33725111
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A rapid, cost-effective tailed amplicon method for sequencing SARS-CoV-2.
    Gohl DM; Garbe J; Grady P; Daniel J; Watson RHB; Auch B; Nelson A; Yohe S; Beckman KB
    BMC Genomics; 2020 Dec; 21(1):863. PubMed ID: 33276717
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Molecular epidemiology of SARS-CoV-2 isolated from COVID-19 family clusters.
    Gunadi ; Wibawa H; Hakim MS; Marcellus ; Trisnawati I; Khair RE; Triasih R; Irene ; Afiahayati ; Iskandar K; Siswanto ; Anggorowati N; Daniwijaya EW; Supriyati E; Nugrahaningsih DAA; Budiono E; Retnowulan H; Puspadewi Y; Puspitawati I; Sianipar O; Afandy D; Simanjaya S; Widitjiarso W; Puspitarani DA; Fahri F; Riawan U; Fauzi AR; Kalim AS; Ananda NR; Setyati A; Setyowireni D; Laksanawati IS; Arguni E; Nuryastuti T; Wibawa T;
    BMC Med Genomics; 2021 Jun; 14(1):144. PubMed ID: 34074255
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Naturally occurring SARS-CoV-2 gene deletions close to the spike S1/S2 cleavage site in the viral quasispecies of COVID19 patients.
    Andrés C; Garcia-Cehic D; Gregori J; Piñana M; Rodriguez-Frias F; Guerrero-Murillo M; Esperalba J; Rando A; Goterris L; Codina MG; Quer S; Martín MC; Campins M; Ferrer R; Almirante B; Esteban JI; Pumarola T; Antón A; Quer J
    Emerg Microbes Infect; 2020 Dec; 9(1):1900-1911. PubMed ID: 32752979
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Quasispecies Analysis of SARS-CoV-2 of 15 Different Lineages during the First Year of the Pandemic Prompts Scratching under the Surface of Consensus Genome Sequences.
    Bader W; Delerce J; Aherfi S; La Scola B; Colson P
    Int J Mol Sci; 2022 Dec; 23(24):. PubMed ID: 36555300
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Semi-Supervised Pipeline for Autonomous Annotation of SARS-CoV-2 Genomes.
    Beck KL; Seabolt E; Agarwal A; Nayar G; Bianco S; Krishnareddy H; Ngo TA; Kunitomi M; Mukherjee V; Kaufman JH
    Viruses; 2021 Dec; 13(12):. PubMed ID: 34960694
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Taxonium, a web-based tool for exploring large phylogenetic trees.
    Sanderson T
    Elife; 2022 Nov; 11():. PubMed ID: 36377483
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Traceability of SARS-CoV-2 transmission through quasispecies analysis.
    Messali S; Rondina A; Giovanetti M; Bonfanti C; Ciccozzi M; Caruso A; Caccuri F
    J Med Virol; 2023 Jun; 95(6):e28848. PubMed ID: 37294038
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Distinct mutations and lineages of SARS-CoV-2 virus in the early phase of COVID-19 pandemic and subsequent 1-year global expansion.
    Chen Y; Li S; Wu W; Geng S; Mao M
    J Med Virol; 2022 May; 94(5):2035-2049. PubMed ID: 35001392
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 27.