These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

142 related articles for article (PubMed ID: 33877635)

  • 1. Concepts, Practices, and Interactive Tutorial for Allosteric Network Analysis of Molecular Dynamics Simulations.
    Botello-Smith WM; Luo YL
    Methods Mol Biol; 2021; 2302():311-334. PubMed ID: 33877635
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Understanding G Protein-Coupled Receptor Allostery via Molecular Dynamics Simulations: Implications for Drug Discovery.
    Basith S; Lee Y; Choi S
    Methods Mol Biol; 2018; 1762():455-472. PubMed ID: 29594786
    [TBL] [Abstract][Full Text] [Related]  

  • 3. The PyInteraph Workflow for the Study of Interaction Networks From Protein Structural Ensembles.
    Lambrughi M; Sora V; Tiberti M
    Methods Mol Biol; 2021; 2253():153-174. PubMed ID: 33315223
    [TBL] [Abstract][Full Text] [Related]  

  • 4. An automated approach to network features of protein structure ensembles.
    Bhattacharyya M; Bhat CR; Vishveshwara S
    Protein Sci; 2013 Oct; 22(10):1399-416. PubMed ID: 23934896
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Predicting Protein Dynamics and Allostery Using Multi-Protein Atomic Distance Constraints.
    Greener JG; Filippis I; Sternberg MJE
    Structure; 2017 Mar; 25(3):546-558. PubMed ID: 28190781
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Integration of network models and evolutionary analysis into high-throughput modeling of protein dynamics and allosteric regulation: theory, tools and applications.
    Liang Z; Verkhivker GM; Hu G
    Brief Bioinform; 2020 May; 21(3):815-835. PubMed ID: 30911759
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Markov models for the elucidation of allosteric regulation.
    Sengupta U; Strodel B
    Philos Trans R Soc Lond B Biol Sci; 2018 Jun; 373(1749):. PubMed ID: 29735732
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Detecting Functional Dynamics in Proteins with Comparative Perturbed-Ensembles Analysis.
    Yao XQ; Hamelberg D
    Acc Chem Res; 2019 Dec; 52(12):3455-3464. PubMed ID: 31793290
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Revealing Atomic-Level Mechanisms of Protein Allostery with Molecular Dynamics Simulations.
    Hertig S; Latorraca NR; Dror RO
    PLoS Comput Biol; 2016 Jun; 12(6):e1004746. PubMed ID: 27285999
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Understanding biomolecular motion, recognition, and allostery by use of conformational ensembles.
    Fenwick RB; Esteban-Martín S; Salvatella X
    Eur Biophys J; 2011 Dec; 40(12):1339-55. PubMed ID: 22089251
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Predicting Allosteric Changes from Conformational Ensembles.
    Zacharias M
    Structure; 2017 Mar; 25(3):393-394. PubMed ID: 28273445
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Studying allosteric regulation in metal sensor proteins using computational methods.
    Chakravorty DK; Merz KM
    Adv Protein Chem Struct Biol; 2014; 96():181-218. PubMed ID: 25443958
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Emerging Methods and Applications to Decrypt Allostery in Proteins and Nucleic Acids.
    Arantes PR; Patel AC; Palermo G
    J Mol Biol; 2022 Sep; 434(17):167518. PubMed ID: 35240127
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Robust Determination of Protein Allosteric Signaling Pathways.
    Botello-Smith WM; Luo Y
    J Chem Theory Comput; 2019 Apr; 15(4):2116-2126. PubMed ID: 30836000
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Symmetry, Rigidity, and Allosteric Signaling: From Monomeric Proteins to Molecular Machines.
    Thirumalai D; Hyeon C; Zhuravlev PI; Lorimer GH
    Chem Rev; 2019 Jun; 119(12):6788-6821. PubMed ID: 31017391
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Generalized correlation-based dynamical network analysis: a new high-performance approach for identifying allosteric communications in molecular dynamics trajectories.
    Melo MCR; Bernardi RC; de la Fuente-Nunez C; Luthey-Schulten Z
    J Chem Phys; 2020 Oct; 153(13):134104. PubMed ID: 33032427
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Allosteric pathway identification through network analysis: from molecular dynamics simulations to interactive 2D and 3D graphs.
    Allain A; Chauvot de Beauchêne I; Langenfeld F; Guarracino Y; Laine E; Tchertanov L
    Faraday Discuss; 2014; 169():303-21. PubMed ID: 25340971
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Community Network Analysis of Allosteric Proteins.
    Rivalta I; Batista VS
    Methods Mol Biol; 2021; 2253():137-151. PubMed ID: 33315222
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Identification of Allosteric Effects in Proteins by Elastic Network Models.
    Hu G
    Methods Mol Biol; 2021; 2253():21-35. PubMed ID: 33315216
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Dancing through Life: Molecular Dynamics Simulations and Network-Centric Modeling of Allosteric Mechanisms in Hsp70 and Hsp110 Chaperone Proteins.
    Stetz G; Verkhivker GM
    PLoS One; 2015; 10(11):e0143752. PubMed ID: 26619280
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.