BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

408 related articles for article (PubMed ID: 33902704)

  • 1. The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples.
    Gweon HS; Shaw LP; Swann J; De Maio N; AbuOun M; Niehus R; Hubbard ATM; Bowes MJ; Bailey MJ; Peto TEA; Hoosdally SJ; Walker AS; Sebra RP; Crook DW; Anjum MF; Read DS; Stoesser N;
    Environ Microbiome; 2019 Oct; 14(1):7. PubMed ID: 33902704
    [TBL] [Abstract][Full Text] [Related]  

  • 2. VITCOMIC2: visualization tool for the phylogenetic composition of microbial communities based on 16S rRNA gene amplicons and metagenomic shotgun sequencing.
    Mori H; Maruyama T; Yano M; Yamada T; Kurokawa K
    BMC Syst Biol; 2018 Mar; 12(Suppl 2):30. PubMed ID: 29560821
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Exploiting a targeted resistome sequencing approach in assessing antimicrobial resistance in retail foods.
    Shay JA; Haniford LSE; Cooper A; Carrillo CD; Blais BW; Lau CH
    Environ Microbiome; 2023 Mar; 18(1):25. PubMed ID: 36991496
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Merging Metagenomics and Spatial Epidemiology To Understand the Distribution of Antimicrobial Resistance Genes from
    Miller EA; Ponder JB; Willette M; Johnson TJ; VanderWaal KL
    Appl Environ Microbiol; 2020 Oct; 86(20):. PubMed ID: 32769191
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Beyond classification: gene-family phylogenies from shotgun metagenomic reads enable accurate community analysis.
    Riesenfeld SJ; Pollard KS
    BMC Genomics; 2013 Jun; 14():419. PubMed ID: 23799973
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Shotgun metagenomics of soil invertebrate communities reflects taxonomy, biomass, and reference genome properties.
    Schmidt A; Schneider C; Decker P; Hohberg K; Römbke J; Lehmitz R; Bálint M
    Ecol Evol; 2022 Jul; 12(6):e8991. PubMed ID: 35784064
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Longitudinal changes in the nasopharyngeal resistome of South African infants using shotgun metagenomic sequencing.
    Manenzhe RI; Dube FS; Wright M; Lennard K; Zar HJ; Mounaud S; Nierman WC; Nicol MP; Moodley C
    PLoS One; 2020; 15(4):e0231887. PubMed ID: 32320455
    [TBL] [Abstract][Full Text] [Related]  

  • 8. AMR-meta: a k-mer and metafeature approach to classify antimicrobial resistance from high-throughput short-read metagenomics data.
    Marini S; Oliva M; Slizovskiy IB; Das RA; Noyes NR; Kahveci T; Boucher C; Prosperi M
    Gigascience; 2022 May; 11():. PubMed ID: 35583675
    [TBL] [Abstract][Full Text] [Related]  

  • 9. MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach.
    Brown BL; Watson M; Minot SS; Rivera MC; Franklin RB
    Gigascience; 2017 Mar; 6(3):1-10. PubMed ID: 28327976
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Dental plaque microbiota sequence counts for microbial profiling and resistance genes detection.
    Veschetti L; Paiella S; Carelli M; Zotti F; Secchettin E; Malleo G; Signoretto C; Zulianello G; Nocini R; Crovetto A; Salvia R; Bassi C; Malerba G
    Appl Microbiol Biotechnol; 2024 May; 108(1):319. PubMed ID: 38709303
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Analysis and evaluation of different sequencing depths from 5 to 20 million reads in shotgun metagenomic sequencing, with optimal minimum depth being recommended.
    Liu J; Wang X; Xie H; Zhong Q; Xia Y
    Genome; 2022 Sep; 65(9):491-504. PubMed ID: 35939836
    [TBL] [Abstract][Full Text] [Related]  

  • 12. PanFP: pangenome-based functional profiles for microbial communities.
    Jun SR; Robeson MS; Hauser LJ; Schadt CW; Gorin AA
    BMC Res Notes; 2015 Sep; 8():479. PubMed ID: 26409790
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Shotgun metagenomic sequencing of bulk tank milk filters reveals the role of Moraxellaceae and Enterobacteriaceae as carriers of antimicrobial resistance genes.
    Rubiola S; Macori G; Chiesa F; Panebianco F; Moretti R; Fanning S; Civera T
    Food Res Int; 2022 Aug; 158():111579. PubMed ID: 35840264
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Introduction to the Analysis of Environmental Sequences: Metagenomics with MEGAN.
    Bağcı C; Beier S; Górska A; Huson DH
    Methods Mol Biol; 2019; 1910():591-604. PubMed ID: 31278678
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Towards facilitated interpretation of shotgun metagenomics long-read sequencing data analyzed with KMA for the detection of bacterial pathogens and their antimicrobial resistance genes.
    Gand M; Navickaite I; Bartsch LJ; Grützke J; Overballe-Petersen S; Rasmussen A; Otani S; Michelacci V; Matamoros BR; González-Zorn B; Brouwer MSM; Di Marcantonio L; Bloemen B; Vanneste K; Roosens NHCJ; AbuOun M; De Keersmaecker SCJ
    Front Microbiol; 2024; 15():1336532. PubMed ID: 38659981
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Improving saliva shotgun metagenomics by chemical host DNA depletion.
    Marotz CA; Sanders JG; Zuniga C; Zaramela LS; Knight R; Zengler K
    Microbiome; 2018 Feb; 6(1):42. PubMed ID: 29482639
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Microbial diversity and antimicrobial resistance in faecal samples from acute medical patients assessed through metagenomic sequencing.
    Yokoyama M; Peto L; Budgell EP; Jones N; Sheridan E; Liu J; Walker AS; Stoesser N; Gweon HS; Llewelyn MJ
    PLoS One; 2023; 18(3):e0282584. PubMed ID: 36928667
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets.
    Portik DM; Brown CT; Pierce-Ward NT
    BMC Bioinformatics; 2022 Dec; 23(1):541. PubMed ID: 36513983
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Evaluation of Host Depletion and Extraction Methods for Shotgun Metagenomic Analysis of Bovine Vaginal Samples.
    Ong CT; Boe-Hansen G; Ross EM; Blackall PJ; Turni C; Hayes BJ; Tabor AE
    Microbiol Spectr; 2022 Apr; 10(2):e0041221. PubMed ID: 35404108
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A sampling and metagenomic sequencing-based methodology for monitoring antimicrobial resistance in swine herds.
    Munk P; Andersen VD; de Knegt L; Jensen MS; Knudsen BE; Lukjancenko O; Mordhorst H; Clasen J; Agersø Y; Folkesson A; Pamp SJ; Vigre H; Aarestrup FM
    J Antimicrob Chemother; 2017 Feb; 72(2):385-392. PubMed ID: 28115502
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 21.