BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

408 related articles for article (PubMed ID: 33902704)

  • 21. Population-level faecal metagenomic profiling as a tool to predict antimicrobial resistance in
    Auguet OT; Niehus R; Gweon HS; Berkley JA; Waichungo J; Njim T; Edgeworth JD; Batra R; Chau K; Swann J; Walker SA; Peto TEA; Crook DW; Lamble S; Turner P; Cooper BS; Stoesser N
    EClinicalMedicine; 2021 Jun; 36():100910. PubMed ID: 34124634
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Targeted metagenomics using bait-capture to detect antibiotic resistance genes in retail meat and seafood.
    Flint A; Cooper A; Rao M; Weedmark K; Carrillo C; Tamber S
    Front Microbiol; 2023; 14():1188872. PubMed ID: 37520363
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Thermus thermophilus DNA can be used as internal control for process monitoring of clinical metagenomic next-generation sequencing of urine samples.
    Janes VA; van der Laan JS; Matamoros S; Mende DR; de Jong MD; Schultsz C
    J Microbiol Methods; 2020 Sep; 176():106005. PubMed ID: 32687865
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Large-scale 16S gene assembly using metagenomics shotgun sequences.
    Zeng F; Wang Z; Wang Y; Zhou J; Chen T
    Bioinformatics; 2017 May; 33(10):1447-1456. PubMed ID: 28158392
    [TBL] [Abstract][Full Text] [Related]  

  • 25. MG-RAST, a Metagenomics Service for Analysis of Microbial Community Structure and Function.
    Keegan KP; Glass EM; Meyer F
    Methods Mol Biol; 2016; 1399():207-33. PubMed ID: 26791506
    [TBL] [Abstract][Full Text] [Related]  

  • 26. HOME-BIO (sHOtgun MEtagenomic analysis of BIOlogical entities): a specific and comprehensive pipeline for metagenomic shotgun sequencing data analysis.
    Ferravante C; Memoli D; Palumbo D; Ciaramella P; Di Loria A; D'Agostino Y; Nassa G; Rizzo F; Tarallo R; Weisz A; Giurato G
    BMC Bioinformatics; 2021 Jul; 22(Suppl 7):106. PubMed ID: 34225648
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Evaluating the Information Content of Shallow Shotgun Metagenomics.
    Hillmann B; Al-Ghalith GA; Shields-Cutler RR; Zhu Q; Gohl DM; Beckman KB; Knight R; Knights D
    mSystems; 2018; 3(6):. PubMed ID: 30443602
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Shotgun Metagenomic Sequencing Analysis of Soft-Rot Enterobacteriaceae in Polymicrobial Communities.
    Doonan J; Denman S; McDonald JE; Golyshin PN
    Methods Mol Biol; 2017; 1539():85-97. PubMed ID: 27900686
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Metagenomic profiling of microbial composition and antibiotic resistance determinants in Puget Sound.
    Port JA; Wallace JC; Griffith WC; Faustman EM
    PLoS One; 2012; 7(10):e48000. PubMed ID: 23144718
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Host DNA depletion on frozen human respiratory samples enables successful metagenomic sequencing for microbiome studies.
    Kim M; Parrish RC; Shah VS; Ross M; Cormier J; Baig A; Huang CY; Brenner L; Neuringer I; Whiteson K; Harris JK; Willis AD; Lai PS
    Res Sq; 2024 Jan; ():. PubMed ID: 38343829
    [TBL] [Abstract][Full Text] [Related]  

  • 31. MBMC: An Effective Markov Chain Approach for Binning Metagenomic Reads from Environmental Shotgun Sequencing Projects.
    Wang Y; Hu H; Li X
    OMICS; 2016 Aug; 20(8):470-9. PubMed ID: 27447888
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Metagenomics-Based Approach to Source-Attribution of Antimicrobial Resistance Determinants - Identification of Reservoir Resistome Signatures.
    Duarte ASR; Röder T; Van Gompel L; Petersen TN; Hansen RB; Hansen IM; Bossers A; Aarestrup FM; Wagenaar JA; Hald T
    Front Microbiol; 2020; 11():601407. PubMed ID: 33519742
    [TBL] [Abstract][Full Text] [Related]  

  • 33. A de Bruijn graph approach to the quantification of closely-related genomes in a microbial community.
    Wang M; Ye Y; Tang H
    J Comput Biol; 2012 Jun; 19(6):814-25. PubMed ID: 22697249
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Metagenomics as a Public Health Risk Assessment Tool in a Study of Natural Creek Sediments Influenced by Agricultural and Livestock Runoff: Potential and Limitations.
    Suttner B; Johnston ER; Orellana LH; Rodriguez-R LM; Hatt JK; Carychao D; Carter MQ; Cooley MB; Konstantinidis KT
    Appl Environ Microbiol; 2020 Mar; 86(6):. PubMed ID: 31924621
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Comparing bacterial communities inferred from 16S rRNA gene sequencing and shotgun metagenomics.
    Shah N; Tang H; Doak TG; Ye Y
    Pac Symp Biocomput; 2011; ():165-76. PubMed ID: 21121044
    [TBL] [Abstract][Full Text] [Related]  

  • 36. UMGAP: the Unipept MetaGenomics Analysis Pipeline.
    Van der Jeugt F; Maertens R; Steyaert A; Verschaffelt P; De Tender C; Dawyndt P; Mesuere B
    BMC Genomics; 2022 Jun; 23(1):433. PubMed ID: 35689184
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Fragmentation and Coverage Variation in Viral Metagenome Assemblies, and Their Effect in Diversity Calculations.
    García-López R; Vázquez-Castellanos JF; Moya A
    Front Bioeng Biotechnol; 2015; 3():141. PubMed ID: 26442255
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Piphillin predicts metagenomic composition and dynamics from DADA2-corrected 16S rDNA sequences.
    Narayan NR; Weinmaier T; Laserna-Mendieta EJ; Claesson MJ; Shanahan F; Dabbagh K; Iwai S; DeSantis TZ
    BMC Genomics; 2020 Jan; 21(1):56. PubMed ID: 31952477
    [TBL] [Abstract][Full Text] [Related]  

  • 39. In-depth resistome analysis by targeted metagenomics.
    Lanza VF; Baquero F; Martínez JL; Ramos-Ruíz R; González-Zorn B; Andremont A; Sánchez-Valenzuela A; Ehrlich SD; Kennedy S; Ruppé E; van Schaik W; Willems RJ; de la Cruz F; Coque TM
    Microbiome; 2018 Jan; 6(1):11. PubMed ID: 29335005
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Tamock: simulation of habitat-specific benchmark data in metagenomics.
    Gerner SM; Graf AB; Rattei T
    BMC Bioinformatics; 2021 May; 22(1):227. PubMed ID: 33932979
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 21.